Transcript Information: S_Transcript_65534.p1


Annotated TAIR IDAT3G16730.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:5695633-5698863 | Reverse length=683
E-Value4.3E-189
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.2020712459895
Replicate 26.513471880945
Replicate 36.3255115076893
Condition 2: 8 Hour
Replicate 17.8697171213732
Replicate 26.6694657305118
Replicate 37.3417825325406
Condition 3: 24 Hour
Replicate 17.6820646718008
Replicate 27.0188938890569
Replicate 36.9351496917106


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_65534.p1 GENE.S_Transcript_65534~~S_Transcript_65534.p1 ORF type:complete len:691 (+),score=200.76,CNDH2_C|PF16858.1|7.5e-50,CNDH2_N|PF06278.7|3e-38,CNDH2_M|PF16869.1|1.1e-26,CNDH2_M|PF16869.1|1.3e+04,CNDH2_M|PF16869.1|1.5e+04 S_Transcript_65534:485-2557(+)
ATGGATAAAGACACCCGAGACCCTAGTACTAGTAGTAGTAAAATTCATACAGTTCAGCCACTTAAAGACCTTGAATCGAATTGGGCAGTGGATCTTGCAAAACGTCTTGAAGATTATCTTTTGAAGATTTGTTCTGGTGAAATTACTGCAGACAATGATGATGCCCATTTCTCCGTAAACTTTGCTGAAGCTGCTTTGTTGCTTCAAGGGTCAATACAAGTGTATAGTAGGAAAGTTGAGTATCTTTACAACTTGGTGTTGCACGCTTTGGAGTTCATTTCTCAGACAAGATCACAAGAGCATGTCGAGAGTACTTCAATCCAGCCTGAAGCAAGTTCTTCTCGTGCAACTCATGATGAGGATGACAAGTTCTGGGTCTTGGATGATATTCCAGTGGATGCTAAAAACTGCTTAGACAACGTAACCAGCAAAAATACGTCTGTGGACCACTTCATAAAGCCTCCTACAAATCTTGTTGTACATGAAGGCGAGTGTTTGGAATCCACCGCTGATGGAGAGCTGGAAACATATCTGCTGGCCACCACCAATCTCTATCGTGATTTCATCTTGTTAGACCCTTGTGATGAAGTGGCAGTTGATGAGTATCTGAAGGGTGATAAATCTGGTGAAGGGCAATATGGTGGCTATCGAGGGAGCTCTTTGATCTCAAAAGCTCATAGAAGTTTTCTTTCTCCTGCCAGCAGACAATCTGGAGGGACCGCCCGCAAGTCATCTGTCAAGAGAGGACAGGGTATCAGCCAGGCTTCACCAGGTGGCGGTGGTGGTGTTGAAATTCCCAAACATGATTTCGAAGCTGGTCCTTCTAATTTTGTTATCCCTGATAATGGAGACCATGGATTTGAATCAGATGATCAGCATTCTCAATATGGGAATTTGTATGAATCTGATGGTGATGGTGATGATGATGATGATGATCCTTGGAAGCCGTTAAATCCTCATGAAGCTGGAAACTTAAAAGTGAAGCCTTTCAAAAAAGTTAATGTTCGCAGGAGGTCTGGGATGACAAAGCACAACAACATTATTTCTCAATTTCCCATTGCAAAGTTGCATGGAACGATTAATCCAGAGCTTACAGAAATTTGGGAGACGCAACTACGTGTTCACAATAGACAAGAATCCCAACCACCTCCATTGTATGAGAAGCTGCGGAAATCCCTTGCTGATGGTGGAACAAGTCCTGATACCTCAATCCCTCTTGAGGATGGTGATGCAGAAAACATTTTTGATGATTTTGACCATCCTGATTTTGACCAACCTGATTTTGACATGCCAGAGATGACTTACATGGATGGAGTAAATAGTCAGCCAGATAATCATGATTATTTTGCTGATAAATGTGACAATGGAAATGCTGCCGTCAATGAGGATCCCAATTCTCAAGCAAGCCTGGAAGAACTTTGTCGTGCTCACCTGGATGCCCTTCTTGCTAGCATAGCTGAGAATGAGAAGCAGACTGAATTGGCTGCTCGAGTTTCAACATGGAAGCAGAGAATTGAAAACGACTTGGAGGTGGAAGATTTACGGCCAGGATTTGACATACATGAGTATGGTGAGACGGTTTTGGACAAACTATCTCTAGAGGAAGGTGAAAATGTCATGTCCTTCACTGATGTTGTGAAAGGGAAAGAAAAACACGATGTTGCTCGGACCTTTTCTGCACTCCTGCAGCTGGTGAATGACCGAAAAGTTGATCTTAATAGAAGTGATTCAGCTGGTGATTCTTTCTGCTACACAGCTGTGGATCCATTCTATGTTCGGCTTCTCAGCCACGAGAAGGGACCAAAAAAAATGCAAGTTCAGCCGACAAAGAAGAGGCGAAAATCTCCCGTTGAGAAGGGATGCAGGAAAGGTGAGATGGATCTTCTGGTTAGAAAGCCATCCCTTGTCAGCTCACCATCATCTGGATGTAAATCAACACCTGTTTTAGCACAACCAAATTGCAAATCCTCTATGAAGCTGGGAAAAAGTGGGGTATTAAGGCGTACCCCAGATGGGAAGCGTAGGCGAAGATCTCGGTTAGTTGGGTCCTTTGACTTGAGTTCAGCAAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_65534.p1 GENE.S_Transcript_65534~~S_Transcript_65534.p1 ORF type:complete len:691 (+),score=200.76,CNDH2_C|PF16858.1|7.5e-50,CNDH2_N|PF06278.7|3e-38,CNDH2_M|PF16869.1|1.1e-26,CNDH2_M|PF16869.1|1.3e+04,CNDH2_M|PF16869.1|1.5e+04 S_Transcript_65534:485-2557(+)
MDKDTRDPSTSSSKIHTVQPLKDLESNWAVDLAKRLEDYLLKICSGEITADNDDAHFSVNFAEAALLLQGSIQVYSRKVEYLYNLVLHALEFISQTRSQEHVESTSIQPEASSSRATHDEDDKFWVLDDIPVDAKNCLDNVTSKNTSVDHFIKPPTNLVVHEGECLESTADGELETYLLATTNLYRDFILLDPCDEVAVDEYLKGDKSGEGQYGGYRGSSLISKAHRSFLSPASRQSGGTARKSSVKRGQGISQASPGGGGGVEIPKHDFEAGPSNFVIPDNGDHGFESDDQHSQYGNLYESDGDGDDDDDDPWKPLNPHEAGNLKVKPFKKVNVRRRSGMTKHNNIISQFPIAKLHGTINPELTEIWETQLRVHNRQESQPPPLYEKLRKSLADGGTSPDTSIPLEDGDAENIFDDFDHPDFDQPDFDMPEMTYMDGVNSQPDNHDYFADKCDNGNAAVNEDPNSQASLEELCRAHLDALLASIAENEKQTELAARVSTWKQRIENDLEVEDLRPGFDIHEYGETVLDKLSLEEGENVMSFTDVVKGKEKHDVARTFSALLQLVNDRKVDLNRSDSAGDSFCYTAVDPFYVRLLSHEKGPKKMQVQPTKKRRKSPVEKGCRKGEMDLLVRKPSLVSSPSSGCKSTPVLAQPNCKSSMKLGKSGVLRRTPDGKRRRRSRLVGSFDLSSAR*

Click here to download the sequence:
Link to NCBI Protein BLAST