Transcript Information: S_Transcript_65537.p1


Annotated TAIR IDAT3G16730.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:5695633-5698863 | Reverse length=683
E-Value8E-142
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5903492626043
Replicate 24.3573242241545
Replicate 35.1814084685498
Condition 2: 8 Hour
Replicate 14.775226482696
Replicate 24.3250166354965
Replicate 33.9133405895098
Condition 3: 24 Hour
Replicate 14.557347042544
Replicate 23.7825554786672
Replicate 33.2623784835547


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_65537.p1 GENE.S_Transcript_65537~~S_Transcript_65537.p1 ORF type:complete len:719 (+),score=194.17,CNDH2_C|PF16858.1|2.8e-49,CNDH2_N|PF06278.7|1.5e-10,CNDH2_N|PF06278.7|1.2e-19,CNDH2_M|PF16869.1|1.2e-26,CNDH2_M|PF16869.1|1.3e+04,CNDH2_M|PF16869.1|1.8e+03 S_Transcript_65537:485-2641(+)
ATGGATAAAGACACCCGAGACCCTAGTACTAGTAGTAGTAAAATTCATACAGTTCAGCCACTTAAAGACCTTGAATCGAATTGGGCAGTGGATCTTGCAAAACGTCTTGAAGATTATCTTTTGAAGATTTGTTCTGGTGAAATTACTGCAGACAATGATGATGCCCATTTCTCCGTAAACTTTGCTGAAGGTTTGTCTTTGTTTTTTGGGTTTTTTTTTTCTTTTTTTTTTCTAATTATTTTGTTTTATTTTTTTTGGGTTTGGGAATTTGCAGCTGCTTTGTTGCTTCAAGGGTCAATACAAGTGTATAGTAGGAAAGTTGAGTATCTTTACAACTTGGTGTTGCACGCTTTGGAGTTCATTTCTCAGACAAGATCACAAGAGCATGTCGAGAGTACTTCAATCCAGCCTGAAGCAAGTTCTTCTCGTGCAACTCATGATGAGGATGACAAGTTCTGGGTCTTGGATGATATTCCAGTGGATGCTAAAAACTGCTTAGACAACGTAACCAGCAAAAATACGTCTGTGGACCACTTCATAAAGCCTCCTACAAATCTTGTTGTACATGAAGGCGAGTGTTTGGAATCCACCGCTGATGGAGAGCTGGAAACATATCTGCTGGCCACCACCAATCTCTATCGTGATTTCATCTTGTTAGACCCTTGTGATGAAGTGGCAGTTGATGAGTATCTGAAGGGTGATAAATCTGGTGAAGGGCAATATGGTGGCTATCGAGGGAGCTCTTTGATCTCAAAAGCTCATAGAAGTTTTCTTTCTCCTGCCAGCAGACAATCTGGAGGGACCGCCCGCAAGTCATCTGTCAAGAGAGGACAGGGTATCAGCCAGGCTTCACCAGGTGGCGGTGGTGGTGTTGAAATTCCCAAACATGATTTCGAAGCTGGTCCTTCTAATTTTGTTATCCCTGATAATGGAGACCATGGATTTGAATCAGATGATCAGCATTCTCAATATGGGAATTTGTATGAATCTGATGGTGATGGTGATGATGATGATGATGATCCTTGGAAGCCGTTAAATCCTCATGAAGCTGGAAACTTAAAAGTGAAGCCTTTCAAAAAAGTTAATGTTCGCAGGAGGTCTGGGATGACAAAGCACAACAACATTATTTCTCAATTTCCCATTGCAAAGTTGCATGGAACGATTAATCCAGAGCTTACAGAAATTTGGGAGACGCAACTACGTGTTCACAATAGACAAGAATCCCAACCACCTCCATTGTATGAGAAGCTGCGGAAATCCCTTGCTGATGGTGGAACAAGTCCTGATACCTCAATCCCTCTTGAGGATGGTGATGCAGAAAACATTTTTGATGATTTTGACCATCCTGATTTTGACCAACCTGATTTTGACATGCCAGAGATGACTTACATGGATGGAGTAAATAGTCAGCCAGATAATCATGATTATTTTGCTGATAAATGTGACAATGGAAATGCTGCCGTCAATGAGGATCCCAATTCTCAAGCAAGCCTGGAAGAACTTTGTCGTGCTCACCTGGATGCCCTTCTTGCTAGCATAGCTGAGAATGAGAAGCAGACTGAATTGGCTGCTCGAGTTTCAACATGGAAGCAGAGAATTGAAAACGACTTGGAGGTGGAAGATTTACGGCCAGGATTTGACATACATGAGTATGGTGAGACGGTTTTGGACAAACTATCTCTAGAGGAAGGTGAAAATGTCATGTCCTTCACTGATGTTGTGAAAGGGAAAGAAAAACACGATGTTGCTCGGACCTTTTCTGCACTCCTGCAGCTGGTGAATGACCGAAAAGTTGATCTTAATAGAAGTGATTCAGCTGGTGATTCTTTCTGCTACACAGCTGTGGATCCATTCTATGTTCGGCTTCTCAGCCACGAGAAGGGACCCAAAAAAAGGCAAGATCAGCCGACAAAGAAGAGGCAAAAATCTCCCGTTGAGAAGGGATGCAGGAAAGGTGAGATGGATCTTCTGGTTAAACAGCCATCCGTTGTCAGCTCATCGTCATCCGGATGTAAATCAACACCTGTTTTAGCACAACCAAATTGCAAATCCTCTATGAAGCTGGGAAAAAGTGGGGTATTAAGGCGTACCCCAGATGGGAAGCGTAGGCGAAGATCTCGGTTAGTTGGGTCCTTTGACTTGAGTTCAGCAAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_65537.p1 GENE.S_Transcript_65537~~S_Transcript_65537.p1 ORF type:complete len:719 (+),score=194.17,CNDH2_C|PF16858.1|2.8e-49,CNDH2_N|PF06278.7|1.5e-10,CNDH2_N|PF06278.7|1.2e-19,CNDH2_M|PF16869.1|1.2e-26,CNDH2_M|PF16869.1|1.3e+04,CNDH2_M|PF16869.1|1.8e+03 S_Transcript_65537:485-2641(+)
MDKDTRDPSTSSSKIHTVQPLKDLESNWAVDLAKRLEDYLLKICSGEITADNDDAHFSVNFAEGLSLFFGFFFSFFFLIILFYFFWVWEFAAALLLQGSIQVYSRKVEYLYNLVLHALEFISQTRSQEHVESTSIQPEASSSRATHDEDDKFWVLDDIPVDAKNCLDNVTSKNTSVDHFIKPPTNLVVHEGECLESTADGELETYLLATTNLYRDFILLDPCDEVAVDEYLKGDKSGEGQYGGYRGSSLISKAHRSFLSPASRQSGGTARKSSVKRGQGISQASPGGGGGVEIPKHDFEAGPSNFVIPDNGDHGFESDDQHSQYGNLYESDGDGDDDDDDPWKPLNPHEAGNLKVKPFKKVNVRRRSGMTKHNNIISQFPIAKLHGTINPELTEIWETQLRVHNRQESQPPPLYEKLRKSLADGGTSPDTSIPLEDGDAENIFDDFDHPDFDQPDFDMPEMTYMDGVNSQPDNHDYFADKCDNGNAAVNEDPNSQASLEELCRAHLDALLASIAENEKQTELAARVSTWKQRIENDLEVEDLRPGFDIHEYGETVLDKLSLEEGENVMSFTDVVKGKEKHDVARTFSALLQLVNDRKVDLNRSDSAGDSFCYTAVDPFYVRLLSHEKGPKKRQDQPTKKRQKSPVEKGCRKGEMDLLVKQPSVVSSSSSGCKSTPVLAQPNCKSSMKLGKSGVLRRTPDGKRRRRSRLVGSFDLSSAR*

Click here to download the sequence:
Link to NCBI Protein BLAST