Transcript Information: S_Transcript_65706.p1


Annotated TAIR IDAT5G38380.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 123 Blast hits to 121 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:15345660-15348217 | Forward length=361
E-Value1.5E-178
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.857966888907
Replicate 215.555506120607
Replicate 315.956075038621
Condition 2: 8 Hour
Replicate 117.611417846172
Replicate 214.767933793078
Replicate 315.687505821644
Condition 3: 24 Hour
Replicate 114.420077585083
Replicate 215.724610840893
Replicate 314.027990989362


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_65706.p1 GENE.S_Transcript_65706~~S_Transcript_65706.p1 ORF type:complete len:356 (+),score=60.04 S_Transcript_65706:339-1406(+)
ATGATGTCTCCTAGACCCATTTCCGAGGATCGTCACCCTGTTTATTCCAGGCAAACTCCCTTACGGATCATTCACTTCATCGGCAACTTCATGCGAGTATGGTCAATCTACTCCATGTACCACTATTTGTCTCAGTCTGGATCTTCAGTCGTTCTCTTTATCTTCAGTTGTCTGGTTCCAGCATCCATTGTGTTTTTAGCTTTACAAAAACCTTGGAAAGGGAGACCGCTTTCTAATACCCAGGTTGTACCTTCTATGATAAATGGTGCAATTACAGCATTGTACTTCATCCTGTGGGTGAAAGGGATCAAATCATGTGGTCCTCTTAGAGCAATTCTTGCAGAGTATTCTGGTGCTGTACTTGGTGTACTGTCTGCTGTTTTGTATGGATGCAGGGGTCATATCTGGAAGAAGGTTGGTGGACTTGTTGCAATGCTGGCATCACTCTACTTTTTATCTCAAGGATGGGCCATGGCTTCTTTTTCTCCTTTCTCATTCAGAGAGAACTCAGATTCTGGTGCACAGTTGGAAAAGGTGCTGGGTATGAAGGAAATGGCAGTACCTGTGTTTGCAGGAATATTATCAGCTTTCAGAAGAGTGATTGCACGGCGTGTTTCACTTAAGAATCAACTGAAAAGGCGCCTTCATGCCATTACCATTGCTTCTGCTATGTGCTTCATGTTTCCAGTTGCTATGTGGGACATGATATTGGGGACCCCTCCTGATAACAACAAAGAATTGCACTTTTCAATGTGGCCCTATCTGAGTACCATTCTTTTTGGAGTTATTTTGATATTCTACGTTGAGAATATTGCAGAAGAGAGATTGCACATGGTGTTCTCATCACCTAAACATCTTATGGTAGCTGGAGGTTGTATCATTGTTCTGGAGATTTTGTACAAACTGGACTTCTCTCTAGCAGGATTTGTTTTCTGCTGTGCACTTTTGGGTTTTGGGATATATGAAGCAACTTCTTTGGAACGAGGCAGGCGAGATTCGCATCAAACTTCAGATCTTTCAGAAGGGCCATTAGAAGACCAGATTCAGATGTCATCACTGCCAACTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_65706.p1 GENE.S_Transcript_65706~~S_Transcript_65706.p1 ORF type:complete len:356 (+),score=60.04 S_Transcript_65706:339-1406(+)
MMSPRPISEDRHPVYSRQTPLRIIHFIGNFMRVWSIYSMYHYLSQSGSSVVLFIFSCLVPASIVFLALQKPWKGRPLSNTQVVPSMINGAITALYFILWVKGIKSCGPLRAILAEYSGAVLGVLSAVLYGCRGHIWKKVGGLVAMLASLYFLSQGWAMASFSPFSFRENSDSGAQLEKVLGMKEMAVPVFAGILSAFRRVIARRVSLKNQLKRRLHAITIASAMCFMFPVAMWDMILGTPPDNNKELHFSMWPYLSTILFGVILIFYVENIAEERLHMVFSSPKHLMVAGGCIIVLEILYKLDFSLAGFVFCCALLGFGIYEATSLERGRRDSHQTSDLSEGPLEDQIQMSSLPT*

Click here to download the sequence:
Link to NCBI Protein BLAST