Transcript Information: S_Transcript_6595.p3


Annotated TAIR IDAT4G10340.1
Annotated Gene Namelight harvesting complex of photosystem II 5
Annotated Gene Symbol(s)LHCB5
Annotation TypeOrtholog
Chromosome Positionchr4:6408200-6409496 | Forward length=280
E-Value1.2E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7611544935046
Replicate 20.64890557522102
Replicate 30.54243341422355
Condition 2: 8 Hour
Replicate 10.15680434056715
Replicate 20
Replicate 30.15673417356604
Condition 3: 24 Hour
Replicate 10
Replicate 21.666456733555
Replicate 30.3709124177223


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_6595.p3 GENE.S_Transcript_6595~~S_Transcript_6595.p3 ORF type:3prime_partial len:136 (+),score=-5.02,Chloroa_b-bind|PF00504.17|3.6e-11 S_Transcript_6595:46-450(+)
ATGCCGCCGAAGAGCGCCACCAAGAAGATCTCGAATGCAGCCAAGAGCGCTGTCAAGAACGTGCCCAAGCCTGGCGCGGCAGCAAAACGGGGAGCAAAGCAGGCGCCGCGGCCACTGAAGAAGGCAGCGAGCGCAGCCAAGTCCGCAGGCTCGCGTGCCTCGAGGGGTGGCAGCCGCTCCAGCAAGGGCTGGACCGGCGGTGCAGGCGGGTCGTCTACAGACCTCAACAAGTGGTATGGCCCCAACCGCAACCTGTACCTCCCCGACGGCCTCCTCGACCGCAGCCAGCTGCCCAACTACCTCGACGGCACCCTGCCCGGCGACTACGGCTACGACCCCCTCAACCTCGGCGCCAACGGCAACGTCGAGAAGTACCGCACCGCCGAGCTCATCCACGCCCGGTGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_6595.p3 GENE.S_Transcript_6595~~S_Transcript_6595.p3 ORF type:3prime_partial len:136 (+),score=-5.02,Chloroa_b-bind|PF00504.17|3.6e-11 S_Transcript_6595:46-450(+)
MPPKSATKKISNAAKSAVKNVPKPGAAAKRGAKQAPRPLKKAASAAKSAGSRASRGGSRSSKGWTGGAGGSSTDLNKWYGPNRNLYLPDGLLDRSQLPNYLDGTLPGDYGYDPLNLGANGNVEKYRTAELIHARW

Click here to download the sequence:
Link to NCBI Protein BLAST