Transcript Information: S_Transcript_66068.p1


Annotated TAIR IDAT3G19840.1
Annotated Gene Namepre-mRNA-processing protein 40C
Annotated Gene Symbol(s)ATPRP40C, PRP40C
Annotation TypeHomolog
Chromosome Positionchr3:6891228-6897227 | Forward length=835
E-Value5E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.2591281497404
Replicate 26.9488082066777
Replicate 37.6583326376476
Condition 2: 8 Hour
Replicate 111.219281592063
Replicate 210.365841891721
Replicate 310.539155150146
Condition 3: 24 Hour
Replicate 17.5464142967507
Replicate 27.0982260303633
Replicate 36.139089987169


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_66068.p1 GENE.S_Transcript_66068~~S_Transcript_66068.p1 ORF type:complete len:1705 (+),score=445.67,SCAPER_N|PF16501.1|7.1e-16 S_Transcript_66068:472-5586(+)
ATGGACAACTCTGGAACAGCAACCGGGGATGATCAGGGCTCAGGATGGTTCGAAGTTAAAAAGAAGCATAGAACCAGCTCAAAATTCTCTATTCAAAACTGGGTTGGGGGTTCTTCAAGGCAGCAGTTGAATGGTAAAGGTCGGAATGCCAATGACAAGCAACGTTCCAATCTTCCAAGAGCAGGAAGAGAATTTTTTCTGAGAGGTGTTGCAGGGAATTCTTCTTCCACAAAGGACAACAAGAAGGATGAGAAGGACGAGGGTTGCCAGGATAAGCATGCAGTTGATGACTGTAATGGTCATTTGGAGTCACCATCAGTGAAAATTATATCGACCGCTACTTCCAGAAGTGCTATCACAGATGGTGAAATTGTCTCTAAAAAGAAGTCTGACATGGTTCAAAAAATTAAATGGGGTGACTTAGAGGATGAAGTGCTCCCCTCAGATCATGGAAGCTCTGCTGTTGGAATAAGGTTTGGTGAAATTGGAGATGATGATTTGGCACTGTGTGGTACATCCAGGGCTCTGTATGATTTGGGTTCTTGTATCTCATCTCAGGATGATCCAGTAGTTAACAAAAATGTCATGGAAGTAGTTGATGTTGCTTGTGATACATGCCATAAGAGTTCACAATCTCCTATCGAGGGATCCAGTGAGGAAAACTGTAAAGAGGTAAATGAAGTAGCTTCAAGTGATGTGGAGATAACATCAACAATTAGCAAAACAGTTGATGCGAAATGCAGTGGTCTCGATCACAAGGAGTTTGCTGTCACTGATGTCGAGCCTTTGAAGGAGTCTCTATGCGCTAATGAACTATGTGGTGATGAGTTCCAGAGTTCAACTGCTGAGGAATTTGCAAAAGCAGGTGAGTTGCAGGAACCCAATCTCACAACTGATGCTGGTGACATCAGTTTATCTTCTGGAAGAGCTGATGATGTTGATTCTAGTACAGTGGTGATTGCGCAAGATCCAGATCTTGCTTCATCAGCACAGGGGCAATCTAAAATTTCTGAGAACTCCAACATAGGGACTGTTGTTGGAGACTCTGGAGGATTACCTGGGGCTGGGAGTACATCTGCAGATAATATACCAAATGCACCGATCATGAGTGCTATTGGAGAACCTGAAGAAGGTGAAAGCAAGGAAAGATTTAGGGAGCGGCTCTGGTGTTTCCTGTTTGAGAACCTCAACAGGGCTATAGATGAACTCTACCTTCTTTGTGAGCTAGAATGTGACTTGGAGCAGGTTAAAGAGGCAATGCTTGTTCTCCAGGAAGCTGAGTCTGATTTCAGTGAACTCAACTTGAGGTTGGAGGAGTTTGAAAAAATGAAGAAGGCATCCCAATCACCAAGCGTGGTGATGACTATGAAAGGCGACCACAGAAGGCCTCATGCTCTATCATGGGAGGTACGTAGAATGACTACTTCACCCCACAGAGCAGAAGTATTGTCCTCTTCACTTGAGGCATTTAAGAAAATTCAAGAAGAGAGGACAAAAGGGCGCACAGCTGGAGATACCAGTTCTGTAGTTCCTAAACGCCCGAGTCGGCTAGTAGCAGATGCTCAGAAGAAGTCCATATTCCCCACATCAGAACCTGAAACCAAGTCAAGAAGGCAGAGTGGTATTTCAGGTCCTGTTCCTGTGAACACAAGCAGAGATCGGAGAAGCACAGAGTCAGGAAGATCTAGCAAAATAAGCTTGGTACAAACAAGCCGTGTCCCTTCAATTTCTTTATCTGCTTCTGATCCCAACTCAATTAAACTACCACCAAAAGGCCATACTGCTGCCTATGCAGGTGGAAAAGGCAAGAAAGATCAGCTAGGATCCTCAGGTGAGGTGGAGAAGCTCCCCACTTCTGGTGAGCTGTTCAGAAGACATAGTACTTCCAGCGATAAAGAGAAGGAGAAGGAAAAGAGAAATTCAATGTCATGGAAACCGTCGGATGCTTGGAAGGAAAAGAGAAATTGGGAGGAAATACTTGCTCCTCCTGGTCATCTTTCTTCTCGCATGTTACATTCACCTTGCATGACCAGAAAAAGTGCTGAGCGTGCACGGATTTTGCATGATAAACTAATGTCCCCTGAGAAGAGAAAGAAGACTGCTGTGGATTTGAAAAAAGAGGCAGAAGAGAAGCATGCGCGTGCTATGAGAATTAGGAACGAGTTGGAGAATGAGAGAGTCCAAAAGCTCCAACGTACATCTGAGAAATTGAACCGTGTGAGTGAGTGGCAGGCTGTCCGCAGTATGAAATTACGGGAGGGCATGAATGCTCGTCATCAACGTAGTGAATCTCGTTATGAAGCTTACATAGCTCAGGTTGTGAAGAGAGCTGGAGATGAAAGTATCAAAGTGAATGAGGTCCGCTTTATTACTTCCTTGAATGATGAAAACAAGAAGTTTTTGTTGCGTCAGAAGCTTCATGATTCAGAGTTGAGGAGGGCTGAAAAGTTTCAAGTAATGAAAACAAAACAGAAAGAAGATATGCTCAGAGAGGAAGCTGTCATGGAACGCAGGAAACTCAAAGAAGCTGAGAAGTTACAGCGCCTTGCTGAAAATCAACGGAAAAAGGAAGAGGCTCAGCTTAGAAGGGAAGAAGAAAGGAAGGCATCGAGTGCAGCGAGGGAGGCAAGAGCCATGGAGCAACTTCGAAGGAAGGAAGAAAGGGTCAAAGCACAACAAGAAGAAGCAGAATTACTTGCACAAAGATTAGCTGAAAGGCTTAGTGAAAGTGAACAACGCCGCAAGCTTTACATCGAGCAGATACGGGAGAGAGCGTCAATGGATTTTAGAGATCAATCATCGCCTCTGGTTTGCCGTTCACTGAATAGGGAGGGCCAAGGAAGATCGACACCACCTGGTAATGCTGATGATAATCAACCAAACAATTCCTCAGGTGCTGGGGATTCTAATCCTGGAAACAACAATGCTGCTATGCAGCAGTCTTTGAAGCGAAGGATAAAGAAAATCAGACAGAAGTTAATGGCTTTGAAGCATGAATTTCCTGAAACTATGGCTGCTGAAAACATTGGCATTGGATATAGAACAACCATGGCAACTGCTAGGGCTAAAGTTGGGAAATGGCTCCAAGATTTGCAGAGACTTCGGCAGGAAAGGAAGGAAGGGGCTGCAAGTATTGGTCTAATAGCTTCAGAAATGATTAAGTTCTTGGACGGAAAGGAGCTGGAATTACAAGCTGCTCGTCAGGCTGGTCTGCTTGATTTCATCTCTTCTGCGCTGCCTGCTTCTCACATATCGAAGCCTGAAGCTTGCCAAGTGACCATATACCTCCTGAGACTCTTAAAAGTGGTACTACTTATGCCTGCAAATAGAAGACATTTTCTTGCTCAGAATCTCTTACCCCCTCTTATTCCAATGCTATTAGCCGCTCTTGAAAGTTACATTAGAATGGCAGCATCTATAAATGTTCCTGGTAGCTCAAATTTACAGACAAGCAAAACTTCATATGAAAATTTCAATTCAATCTCTGAAGTACTAGATGGTTTCTTGTGGACTGTGACAATGATTATTGGCCTTCCTACCTTAGACGAACGCCAACTTCGGATGCAGGATGGCCTACTTGAACTTGTTGTTTCATATCAAATCATCCACCGCCTTCGAGATCTTTTTGCACTGTATGACAGACCTCATGTGGAAGGATCTCCATTTCCATCATCGATACGGCTGAGCATAAATCTATTGGTGGTTTTGACATCTAGACCATGTACTGTTTCTTCAATTGACTGGGAATGTATGCCAGAGTTGGCAACGCTAGACAATAAAGCAGAAGTATCTAATCTCATGGAGAATTCTGATTCTGTTTATCCACTTGTGCACAATTCCCAGAAGCAGCCACAGCTACCACTATCAGATGTAAATTGTGATTCATCTGGAGTTTCTGGTGTACAAAAGGAAGATCAGTTTGAAGAATCACACCAAAAAAAGCTACTGGATGGTTCTATATCCTCTGGAGTACAGGTTGAAAAGGAGCATAGTCATATTGAGTTAAATAGCAATGACACGGGAACAGAAAATGAACATAATGACTCACAGAAAGATTTGGGTTTGAGCATTCCCAAGTCTAACATTCCTCAGAAGGATGAGAAAAACAACTTAGATAATAATATAGTTAAGAAGGATGAACAACATATGAATTTAAAACAGCCTCATGCATGTCTCCTATCTGCCATTGCTGAGACTGGTTTAGTCAGTCTGCCATCTTTGGTGACAGCTGCGCTATTGCAGGCAAACAATAAGTTGTCTTCTGAACAGGGATTATATGTCCTCCCATCAAATTTTGAGGAAGTAGCAACTGGCGTATTGAAAGTATTGAACAATCTAGCTCTGATGGACATTACTTTCATGCAGCAGATGCTAGCCAGGCCAGATCTGAAAATGGAGTTTTTCCACATCATGAGTTTCCTTCTGACCCACTGCACCAATAATTGGAAAGTAGCAAATGATCAGGTTGGTTCACTTCTGCTTGAATCATTGTTGCTTCTTGGCTACTTTTCCTTGTTTCATCCTGGAAATCAAGCAGTCCTCCGATGGGGCAACAGTCCGACCATCCTTCATAAGGTCTGTGATTTACCATTCGCATTTTTTAGCGACTCGGAATTGATGCCAATCTTGGCTGGAACCCTTGTGGCTGCATGCTTTGGGTGTGAACAGAACAAAGGTGTGGTCCAACAGGAACTCAGTACAGAAATGATTCTTTCGCTGGTGAAGTCATGCAGAAGTGGTATATGTACAGCTCGGTCCAGGTCCCCATTAGGTAATCCATCTGTTGAAGATTCAACAGAAAGTACATCAGTAACCATTGAGCCAGGGAAATTGCAAAACGACGTGTTAGTAAAATCAACTCGGTCATCAATTGCAAAAAGCTCCCGCCTTGCTCTATCCAAGGGTGCTCTGTTGGGAAGCAATGGCAATAGGATTGGTAAGATGAGAAACTGTAGGGACAGCAAAACAAGCAAAACTTTAGAAGAGACGATTTCAAAGCAGAAAATGGCAGCGTCACAAGCTCCTGCAACTCTGCCTTTGTACGCTAGGTTCCCAGGAAGCTTTGTCGATAGAGCAGAGGGGTTCTTTTCCCTCGAGCCTAGCAGCCCTGGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_66068.p1 GENE.S_Transcript_66068~~S_Transcript_66068.p1 ORF type:complete len:1705 (+),score=445.67,SCAPER_N|PF16501.1|7.1e-16 S_Transcript_66068:472-5586(+)
MDNSGTATGDDQGSGWFEVKKKHRTSSKFSIQNWVGGSSRQQLNGKGRNANDKQRSNLPRAGREFFLRGVAGNSSSTKDNKKDEKDEGCQDKHAVDDCNGHLESPSVKIISTATSRSAITDGEIVSKKKSDMVQKIKWGDLEDEVLPSDHGSSAVGIRFGEIGDDDLALCGTSRALYDLGSCISSQDDPVVNKNVMEVVDVACDTCHKSSQSPIEGSSEENCKEVNEVASSDVEITSTISKTVDAKCSGLDHKEFAVTDVEPLKESLCANELCGDEFQSSTAEEFAKAGELQEPNLTTDAGDISLSSGRADDVDSSTVVIAQDPDLASSAQGQSKISENSNIGTVVGDSGGLPGAGSTSADNIPNAPIMSAIGEPEEGESKERFRERLWCFLFENLNRAIDELYLLCELECDLEQVKEAMLVLQEAESDFSELNLRLEEFEKMKKASQSPSVVMTMKGDHRRPHALSWEVRRMTTSPHRAEVLSSSLEAFKKIQEERTKGRTAGDTSSVVPKRPSRLVADAQKKSIFPTSEPETKSRRQSGISGPVPVNTSRDRRSTESGRSSKISLVQTSRVPSISLSASDPNSIKLPPKGHTAAYAGGKGKKDQLGSSGEVEKLPTSGELFRRHSTSSDKEKEKEKRNSMSWKPSDAWKEKRNWEEILAPPGHLSSRMLHSPCMTRKSAERARILHDKLMSPEKRKKTAVDLKKEAEEKHARAMRIRNELENERVQKLQRTSEKLNRVSEWQAVRSMKLREGMNARHQRSESRYEAYIAQVVKRAGDESIKVNEVRFITSLNDENKKFLLRQKLHDSELRRAEKFQVMKTKQKEDMLREEAVMERRKLKEAEKLQRLAENQRKKEEAQLRREEERKASSAAREARAMEQLRRKEERVKAQQEEAELLAQRLAERLSESEQRRKLYIEQIRERASMDFRDQSSPLVCRSLNREGQGRSTPPGNADDNQPNNSSGAGDSNPGNNNAAMQQSLKRRIKKIRQKLMALKHEFPETMAAENIGIGYRTTMATARAKVGKWLQDLQRLRQERKEGAASIGLIASEMIKFLDGKELELQAARQAGLLDFISSALPASHISKPEACQVTIYLLRLLKVVLLMPANRRHFLAQNLLPPLIPMLLAALESYIRMAASINVPGSSNLQTSKTSYENFNSISEVLDGFLWTVTMIIGLPTLDERQLRMQDGLLELVVSYQIIHRLRDLFALYDRPHVEGSPFPSSIRLSINLLVVLTSRPCTVSSIDWECMPELATLDNKAEVSNLMENSDSVYPLVHNSQKQPQLPLSDVNCDSSGVSGVQKEDQFEESHQKKLLDGSISSGVQVEKEHSHIELNSNDTGTENEHNDSQKDLGLSIPKSNIPQKDEKNNLDNNIVKKDEQHMNLKQPHACLLSAIAETGLVSLPSLVTAALLQANNKLSSEQGLYVLPSNFEEVATGVLKVLNNLALMDITFMQQMLARPDLKMEFFHIMSFLLTHCTNNWKVANDQVGSLLLESLLLLGYFSLFHPGNQAVLRWGNSPTILHKVCDLPFAFFSDSELMPILAGTLVAACFGCEQNKGVVQQELSTEMILSLVKSCRSGICTARSRSPLGNPSVEDSTESTSVTIEPGKLQNDVLVKSTRSSIAKSSRLALSKGALLGSNGNRIGKMRNCRDSKTSKTLEETISKQKMAASQAPATLPLYARFPGSFVDRAEGFFSLEPSSPG*

Click here to download the sequence:
Link to NCBI Protein BLAST