Transcript Information: S_Transcript_68490.p1


Annotated TAIR IDAT5G44800.1
Annotated Gene Namechromatin remodeling 4
Annotated Gene Symbol(s)CHR4, PKR1
Annotation TypeOrtholog
Chromosome Positionchr5:18083659-18092162 | Reverse length=2223
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.7762840993757
Replicate 26.4947579101647
Replicate 36.8147368393269
Condition 2: 8 Hour
Replicate 18.3577540258711
Replicate 28.3746990514267
Replicate 38.2790901945534
Condition 3: 24 Hour
Replicate 16.9584975969599
Replicate 26.6617266891812
Replicate 35.9508953627185


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_68490.p1 GENE.S_Transcript_68490~~S_Transcript_68490.p1 ORF type:complete len:2276 (+),score=541.49,SNF2_N|PF00176.19|4.9e-64,Helicase_C|PF00271.27|1.5e-18,Helicase_C|PF00271.27|9.7e+02,Chromo|PF00385.20|1.1e+04,Chromo|PF00385.20|0.00014,Chromo|PF00385.20|1.5e-11,Chromo|PF00385.20|1.2e+04,ResIII|PF04851.11|4.4e-11,ResIII|PF04851.11|4.8e+03,HDA2-3|PF11496.4|5.1e-11,PHD|PF00628.25|2.6e-07,DUF1087|PF06465.9|6.6e-07 S_Transcript_68490:449-7276(+)
ATGAAGGAAAAGGGTCCAACACCTAGTAATATGATCAGTAGAAACTGGGTGTTAAAACGCAAGCGTAAAAAGCTTCCATATGGACCAGATGCCTCTGCCAACAAGGATAAGGAGGATGGTTCAGCTACTGAATCTGCCAGGCACCCTTCTTCAGATAAAGACTTGCAGAACACCGGGACAAAATCAGATCATTTGACATTGAAGAGAAAAGGAACTGATGGGTATTATTATGAATGCGTGATTTGTGATCTTGGTGGAAATTTGTTGTGCTGCGATAGCTGTCCGAAGACTTATCATCTTGAATGCCTTGATCCACCCCTTAAGCGTATTCCAAATGGCAAGTGGGAGTGTCCCACCTGCTGTAGTAGAAAGAATTTATCAGCTTCTATCGACCCCCAAGACTTAGTTAAACGAGCCAGAACGAAGACAGTGATTGAAAAGTCAAAAGCTGGAGGGAAGACGTCTAATAGTCTCAAAGTATCACAGCTCTTGGGAAGCTCCATTGGCAAGAAAAGATCATCCAGCAAAAGAAAATCTGGATTACCTGACAAAACTCATTCTTTAAAGAATATAGATGGCTCACGAATTGATTTGTTGGGCTGTAGCAAGTTTGGGCAATTGTCTGTTGATGGTTCTGTGGATGTTCTCTCTCCATCTGACATTGCTGATGATGAAAAGCAAAGTCAGACGACTACTACTCGAGAAATTGAAAAGATTTCAGGCTCTCCAGTAGCTGAGAAAAAGTTAAACTGTGTGTTGGAGGATGAGTTGCCGTCTTCAAGACATACTGAAATGGAGAAAAGTGGAAGTGCTGAGCACAAGTCTGAATCCCCCGATAGAATTCAATGTTCTGGGAAGGATGTTGCAGCTGAGTTAGGAGTACTTGCAGAAGCTCGTAAAAGAAAACATAAAACTGACAAAGATGGAAAGAAGAAAAAATCCAGGGTGTCTTTTGGGGAGTCTTCAATGACAAACTCTCACAAGGACAAAGGGAAACCACCTTTTCCATCTTTAAAGATTAATAAGCCACAAAGGAAACGTCGTTCTGTTCATCACAGAAGTTTTTCTTCACGTGCTGGGTCTGAAGGGGTAGATAGTCAGCAAGGCCATGAGGCACCTTCCGGGGAAACAGTGGGTACATCAAATGGGTTAGCAAAAGCAGACATTGTGCCTGATAAGATGATATTATCTGAAGACAATTCAATTGAAGAACTTCTACAGGTTGATCGGGTCTTGGGATGTAGAGTGAAAGCGGAAACAACACACTCTCCAGGTCAACAACCTGGGATAATGGCAACTGGGGCTCCTATGGATGATCATCAGAGTCTGGAAAATCTAATCAGAGAGTGTGAAGAGAAAGCTGGCTCTGAGCTGTTGCTGTATGATTCTGAACATCCTACTGCAGTTCAGAATGTTGAAGGCAGTTCAGATGAGGGGCAATGTGTTCAGGATGATAGCGCAGTTGATAAAATACAGTTATACAGAAAATCTGAGACTATAGTGTGCAATCAAGGGAATATGCAGGTTGAGGTGGGCAAAGAGTTAGATTCTGCTGTTGTAATTGGTAAAGATGAAGGCAAATCTGAATTTCTAAGTGAGGATTTTCCATCGTCTCATATAAAGAAAAGTCAGAGTAAGGTGAATGAAGCAGTTGTAAATGATGCTAGTTGTAACAAAAATGTTCCGCAGCCTACCTTGACTGGATCTACATCATTTGAAGGAGAAAAGATCTCATATGAATTTTTAATTAAGTGGGTAGGGAAATCTCATATTCACAACAGTTGGATTCCTGAAGCGAAATTAAAAGCTTTGGCCAAAAGAAAGCTAGATAACTATAAGGCAAAATATGGAACTGCAGAAATAGATATCTGTGAGGAGCGATGGAAACAGCCCCAGCGGGTGATTGCAGTCCGATCATCGAAGGATGGTACAACTGAAGCTTTTATCAAATGGTCAGGTCTTCCATACGACGAATGCACTTGGGAAAGAACAGATGTGCCTGAAATTGAGAACTTCTTGCATTTGGTTGATCAGTTCAATCAGTTTGAACGTCAAACTCTGGAAAAGGATGCTGAGAAAGATACTTTAGTTAAGAAGGCGGATTCTCATCAAAATGAGATCGTTCCTCTTACTACGCAGCCTGAGGAGCTCAAAGGTGGTGCCCTATTTCCTCATCAGCTGGAAGCTCTCAATTGGCTGCGCAAATGCTGGTATAGATCTAAAAATGTTATTCTTGCTGATGAGATGGGCCTTGGAAAAACTGTATCTGCATGCGCCTTCATTTCGTCCTTATACTTTGAGTTTAAAGTGAAGCTTCCTTGTCTTGTCTTGGTGCCTCTTTCAACAATGCCAAATTGGATGGCTGAGTTTGCCTTATGGGCTCCAGACTTGAATGTAGTTGAGTATCATGGGAATGTCAAAGGAAGAACTCTAATTCGTCAATTTGAATGGCACGCTAGCCTTCCAAATGAATTGAATAAGAAAAGTGCAGCTTACAAATTTAATGTTCTGCTAACCACCTATGAGATGGTCCTTGCTGATGCTTCTCAGTTGCGTGGAATTCCTTGGGAAGTTCTCATTGTTGATGAAGGACATCGGCTTAAGAACTCCAGTAGTAAGCTTTTTAGCTTGCTTAATTCCTTTTCTTTCCAGCATCGTGTACTGTTGACTGGGACGCCTCTTCAAAACAACATTGGCGAGTTGTACAACTTGCTCAACTTTTTGCAGCCAACTTCATTTCCTTCTTTATCATCTTTTGAGGAAAAGTTTGAGGACCTCTCAACTGCTGAAAAGGTGGAGGAACTGAAGAAACTTGTTGCTCCACATATGCTAAGAAGGCTGAAGAAAGATGCCATGCAAAATATCCCTCCAAAGACTGAACGAATGGTTCCTGTTGAGCTGTCCTCTATCCAGGCTGAATATTACCGTGCAATGCTAACAAAGAACTATCAGATCTTGAGGAATATAGGGAAAGGGGTTCCACAACAGTCAATGCTTAACATTGTTATGCAACTAAGAAAGGTTTGCAACCATCCATATCTAATCCCTGGTACAGAACCTGATTCTGGATCAGTTGAATTCCTGCAAGAGATGCGGATAAAGGCTTCAGCCAAGCTTACTCTGTTGCACTCAATGCTCAAGTTGCTACATAAAGATGGTCACAGAGTCCTGATATTTTCTCAGATGACAAAGCTTCTAGATATTTTGGAAGACTATCTGACTATAGAATTTGGTTCAAAATCATTTGAGAGAGTTGATGGATCTGTTTCAGTTGGTGATCGTCAAGCAGCAATTGCACGCTTCAATCAAGATAGAAGTCGGTTCGTTTTCTTGTTGTCAACACGATCTTGTGGCCTTGGAATCAATTTGGCGACTGCTGACACTGTCATAATTTATGACTCGGATTTCAATCCACATGCTGATATCCAAGCTATGAACCGTGCCCATCGAATCGGACAATCCAACAGACTTTTGGTTTATAGGCTTGTGGTTCGTGCTAGTGTTGAAGAACGTATTTTGCAGCTAGCCAAGAAAAAGCTAATGCTAGACCAGCTTTTCGTAAACAAGTCTGAATCTCAGAAGGAAGTGGAAGACATTCTTCGTTGGGGAACTGAAGAACTTTTCAGTAGTTCTAGTAAGGACAGAGGTGAGAATGATTTGAGCAAGGACGAAGTACTTGCAGATACTGAGCATAAGAGCAAGAGAAGACTTGGTGGCCTTGGAGATGTTTACCAAGATAAATGCACAGAGGGAAGCTGCAAAATCATTTGGGATGAGAATGCCATCTTAAAACTTCTCGACCGTTCGAACCTTCAATCTGGATCACCGGATAATTCTGAAGGTTATGGAGAACATGATATGCTTGGATCAGTTAAGGCTCTGGAATGGACTGATGAACCATTGGATGAGGAAGGAAAAGCAGGTTCACCTGTTGTTCTCACAGATGATGCTTCCGGACCACATTCAGAAAAAAGGGAAGAATTAGGCATTGCTGAGGAGAACGAGTGGGATCGACTTCTACGTGTCAGGTGGGAGAAATATCAGAATGAAGAGGAAGCTTCTCTTGGTAGAGGAAAACGCCTTAGGAAAGCTGTTTCTTACAGGGAGGCATTTGCACCTCATCCGAATGAAACTCTGAGTGAGAGGGCTGGTGAAGACGACCGTGAACCCGAACCAGAGCCTGTAAAGGAGTACACTCCAGCAGGACTTGCGTTGAAGGAGAAATTTGCTAGGTTGCGTGCTCGGCAAAAAGAAAGACTTGCTTGGAGGAAAGCTCTTGAAGAATCCTTATTAGCTGGCAGTTTTCCTAGACCTGAACTGCTTTCCCAGTGCCCTTCTGATATGGAAGGGAAAGAGGAGACTACAAGAACAGTGCAACTACCTAGAGAAAAGGTCAACTCAATTGAGGTCGGGGATGACATGATGGGTGAAATGGAAGCTCCTAATAAATCTAGTGGCACAATTCAAAGAGTTGGTCGACTATCAAAGCATAAGTTGAGCCATCAGCTTAACTCATCCGTAAAAGTTCCAAGCCATTCTTCTGAAAAAGCTATTTTGGCTCAGAAGGATGTTGCAAATTTAGCTACTTCAGCCGCTTCGAACTATTTGTTGCCTGTTCTTGGACTTTGTGCTCCAAATGCTCCAAATAATTGTTTATCAGAGTCAGCTCACAGAAATTTCTCTAGATCATATGAAAGAGAAGGTAGACATGAAAACCAATCAGATTTTCCTACACAGACATCTGCTTGCCCTAGTACTTCTACTGACAAGGAAGTGAAGGGTTTTGAGGTAGCTACTGGCAAATTGAGACTCCCTGAAGTGTCTCTGGGTTTTCCCCTGGAGCATTTCAAAAGCAGCTTTCAGGACAACTCACTCCCTTTTCTGATGTACCCTCCACCGTTCTTGCGACGGAAGTTCCCAGATGGTATAGAGAGCACAGGTGCTAGTTCTGCTGATTTTCTGGAAAAGATGGGATTGCCAAAGTTGCCTTTCGATGAAAAGTTGCTTCACGCTTTTCCCTTTTCAAGCAGACTGCAAGGCACAACACCCGACTTAGCCAACTTATCCCTGGAGAAGAGAAATGAAATTGCAAATGGACAAGTCCCTTCCACAATGCCTTTCTTGCCTAATTTCAAATTCCCTCTGCAAGATTTACCTCACTGTAATCAGGAAGAGATAGACCCACTACCAACACTAAGTTTGGGACGCAAGCCAAACACATGTCGATCATTTCCTGAAAGTCACAGGAAGGTTCTTGAGAATATAGCTATGAGGACAGGATCTGGATCAAGCAATTTACTTAAGAGAAAGTCGAAGCCAGATGGTTGGTCAGAAGATGAACTTGACTCTCTTTGGATTGGTGTCCGTAGACATGGACACGGCAACTGGGATGCCATGCTTAGGGACCCCAGGCTGATGTTTTCAAAGTACAAAACTCCAAGTGAACTGGCTTCAAGATGGGAAGAGGAACAGCTGAAGATATATGATAATTCTCTAGCCATGAGACCAAGTAAGCCAAAATCTCAGAAGTCTGCCCTTTTCCCAAGCATTTCTGATGGAATGATGTCCCGGGCCTTTCATGGAAGTAGGCTGGGTGGACCTGTCAACTTTCAGTCACACTTAACAGACATCAAATTGGGATTTGGTGATCTTGCAGCCAACTTTCGCCCTTTTGAAGCTTCTAGTTTTGCTGGTCTTCATAATGAACATTATGCTCCATTATCAGCCTTGGCTCCTGGTAATTTTCAAGCAAGGTTCGGGGGAGATCTTCCTTCAATTGTCCCTGATATTCAGGATACTTTTTCAAATATGCCGATGGAGCCACCAGTGCGTCATAATGCATTTGGAGCCAGTAATTCAAGAGCTTTGGGCTTAAACTACTCAAGTGGCTGTGATGTTTGGCAGGAAGATGAATTAGATGCGAGTAGATATCAAAAGCCCCCTTGTCAGCTAGATAGCTCATTGAATATTCCTTGTGGTTCCCAGATTGATGTGGGTACTAACGAGCTGCCAGCTTCTGGTTTATTGCCTAATCTAAATAATGCACCAAATCCTTCAAGCGTGAAAGGTAAGGAAGTAGTAGTAGAGAGCAGTTCTTCGAAGGATAAGCTGCCACATTGGCTTCGGAAAGCTGTAGGTGCTACTTCTAAGACTCCTGATCCTGAACTTCCACCTGGAGTATCGGCCATAGCTGAGTCAGTTCGTTTGTTGTATGCTGAAGAAAAACCTGCAATCCCACCATTTGTTACTCCTGGACCTCCTCCTCCTCAACCAAGAGATCCTAGAAAGACCTTGAAGAAAAGAAAGAAAAGAAGACATCATTTGCTCATGACAATGCCAACTGATGTCACTGGAAGCAGCCAAGACTTTCATGGTAGCTCCTCTAGTGATAGCCTCCGTTCAAGGTCAATTCCAAGTGCTCCATCAATGTCAATATTCCAATTGCAGCCCCCAAGTTTGGGGCTGATGAACCCATCATCGTCATTCTTAGAGCCCACCAGGAAATCGAGCATTGGATTATCGCCCTCTCCGGAGGTGCTTCACTTGGTGGCTTCCTGTGTAACTCCTGGTTTATGTGGGCCTGCAAACTCCATCTTGACCTCCCCAGCTTTCCCTGACAATAAACAAGCCCCCATGCAAGAACCAGATCAAAAAGTAAATAAGGATGTGAAGGTGAACTCCCCGCATGACCTCAGGGCGGACGAATCTCATAGTGGGGAATCTAGCAAGACGCAGTCTGAGTCACCCCAAACCAACCAGCCAGATGCAGAGGAAATATCATCAGATAAAACTGTTTCAGATAATCAGAATGGTGATAATGAGCCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_68490.p1 GENE.S_Transcript_68490~~S_Transcript_68490.p1 ORF type:complete len:2276 (+),score=541.49,SNF2_N|PF00176.19|4.9e-64,Helicase_C|PF00271.27|1.5e-18,Helicase_C|PF00271.27|9.7e+02,Chromo|PF00385.20|1.1e+04,Chromo|PF00385.20|0.00014,Chromo|PF00385.20|1.5e-11,Chromo|PF00385.20|1.2e+04,ResIII|PF04851.11|4.4e-11,ResIII|PF04851.11|4.8e+03,HDA2-3|PF11496.4|5.1e-11,PHD|PF00628.25|2.6e-07,DUF1087|PF06465.9|6.6e-07 S_Transcript_68490:449-7276(+)
MKEKGPTPSNMISRNWVLKRKRKKLPYGPDASANKDKEDGSATESARHPSSDKDLQNTGTKSDHLTLKRKGTDGYYYECVICDLGGNLLCCDSCPKTYHLECLDPPLKRIPNGKWECPTCCSRKNLSASIDPQDLVKRARTKTVIEKSKAGGKTSNSLKVSQLLGSSIGKKRSSSKRKSGLPDKTHSLKNIDGSRIDLLGCSKFGQLSVDGSVDVLSPSDIADDEKQSQTTTTREIEKISGSPVAEKKLNCVLEDELPSSRHTEMEKSGSAEHKSESPDRIQCSGKDVAAELGVLAEARKRKHKTDKDGKKKKSRVSFGESSMTNSHKDKGKPPFPSLKINKPQRKRRSVHHRSFSSRAGSEGVDSQQGHEAPSGETVGTSNGLAKADIVPDKMILSEDNSIEELLQVDRVLGCRVKAETTHSPGQQPGIMATGAPMDDHQSLENLIRECEEKAGSELLLYDSEHPTAVQNVEGSSDEGQCVQDDSAVDKIQLYRKSETIVCNQGNMQVEVGKELDSAVVIGKDEGKSEFLSEDFPSSHIKKSQSKVNEAVVNDASCNKNVPQPTLTGSTSFEGEKISYEFLIKWVGKSHIHNSWIPEAKLKALAKRKLDNYKAKYGTAEIDICEERWKQPQRVIAVRSSKDGTTEAFIKWSGLPYDECTWERTDVPEIENFLHLVDQFNQFERQTLEKDAEKDTLVKKADSHQNEIVPLTTQPEELKGGALFPHQLEALNWLRKCWYRSKNVILADEMGLGKTVSACAFISSLYFEFKVKLPCLVLVPLSTMPNWMAEFALWAPDLNVVEYHGNVKGRTLIRQFEWHASLPNELNKKSAAYKFNVLLTTYEMVLADASQLRGIPWEVLIVDEGHRLKNSSSKLFSLLNSFSFQHRVLLTGTPLQNNIGELYNLLNFLQPTSFPSLSSFEEKFEDLSTAEKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVPQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLQEMRIKASAKLTLLHSMLKLLHKDGHRVLIFSQMTKLLDILEDYLTIEFGSKSFERVDGSVSVGDRQAAIARFNQDRSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSESQKEVEDILRWGTEELFSSSSKDRGENDLSKDEVLADTEHKSKRRLGGLGDVYQDKCTEGSCKIIWDENAILKLLDRSNLQSGSPDNSEGYGEHDMLGSVKALEWTDEPLDEEGKAGSPVVLTDDASGPHSEKREELGIAEENEWDRLLRVRWEKYQNEEEASLGRGKRLRKAVSYREAFAPHPNETLSERAGEDDREPEPEPVKEYTPAGLALKEKFARLRARQKERLAWRKALEESLLAGSFPRPELLSQCPSDMEGKEETTRTVQLPREKVNSIEVGDDMMGEMEAPNKSSGTIQRVGRLSKHKLSHQLNSSVKVPSHSSEKAILAQKDVANLATSAASNYLLPVLGLCAPNAPNNCLSESAHRNFSRSYEREGRHENQSDFPTQTSACPSTSTDKEVKGFEVATGKLRLPEVSLGFPLEHFKSSFQDNSLPFLMYPPPFLRRKFPDGIESTGASSADFLEKMGLPKLPFDEKLLHAFPFSSRLQGTTPDLANLSLEKRNEIANGQVPSTMPFLPNFKFPLQDLPHCNQEEIDPLPTLSLGRKPNTCRSFPESHRKVLENIAMRTGSGSSNLLKRKSKPDGWSEDELDSLWIGVRRHGHGNWDAMLRDPRLMFSKYKTPSELASRWEEEQLKIYDNSLAMRPSKPKSQKSALFPSISDGMMSRAFHGSRLGGPVNFQSHLTDIKLGFGDLAANFRPFEASSFAGLHNEHYAPLSALAPGNFQARFGGDLPSIVPDIQDTFSNMPMEPPVRHNAFGASNSRALGLNYSSGCDVWQEDELDASRYQKPPCQLDSSLNIPCGSQIDVGTNELPASGLLPNLNNAPNPSSVKGKEVVVESSSSKDKLPHWLRKAVGATSKTPDPELPPGVSAIAESVRLLYAEEKPAIPPFVTPGPPPPQPRDPRKTLKKRKKRRHHLLMTMPTDVTGSSQDFHGSSSSDSLRSRSIPSAPSMSIFQLQPPSLGLMNPSSSFLEPTRKSSIGLSPSPEVLHLVASCVTPGLCGPANSILTSPAFPDNKQAPMQEPDQKVNKDVKVNSPHDLRADESHSGESSKTQSESPQTNQPDAEEISSDKTVSDNQNGDNEP*

Click here to download the sequence:
Link to NCBI Protein BLAST