Transcript Information: S_Transcript_6950.p1


Annotated TAIR IDAT5G53490.3
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21723488-21724621 | Reverse length=250
E-Value7.4E-105
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1134.0842274998
Replicate 2144.11226370547
Replicate 3165.27830720027
Condition 2: 8 Hour
Replicate 1270.87783019848
Replicate 2288.26364970678
Replicate 3295.42857723159
Condition 3: 24 Hour
Replicate 1122.88908925347
Replicate 2153.05305945389
Replicate 3145.96587400408


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_6950.p1 GENE.S_Transcript_6950~~S_Transcript_6950.p1 ORF type:complete len:235 (+),score=49.24,Pentapeptide|PF00805.18|5.7e+03,Pentapeptide|PF00805.18|2e-06,Pentapeptide|PF00805.18|1.5e-06,Pentapeptide|PF00805.18|6.1e-09,Pentapeptide_3|PF13576.2|0.00044,Pentapeptide_3|PF13576.2|6.9e-06,Pentapeptide_3|PF13576.2|8e-06,Pentapeptide_4|PF13599.2|2.3e+03,Pentapeptide_4|PF13599.2|0.005,Pentapeptide_4|PF13599.2|3.1e-10 S_Transcript_6950:2103-2807(+)
ATGGCGACCCTTGGCATTTCCCTTCACCCAAATGGCATCTCCATTAGAAACTTGTCACTCAAACGCCTTCATTTCTCAGCTCCTAAATCTACACTCAGGATCTACTGCTCAGCAACTGGAAATGGCAGTGGCAAAGAGAACTCGTCTCAGCTCAAAGAACTTCGGAGCGTGGCATTTGGCCTCCTGGCTACATGGGTCATCACTGCTGCCTCACCTGTAGTAGCTGCTAATCAGAGATTGCCTCCATTGTCAACAGAGCCCAACCGCTGTGAGCGTGCATTTGTTGGTAACACGATTGGTCAAGCGAATGGTGTCTATGACAAGCCTTTAGATCTCCGTCAATGTGACTACACAAATGATAAGTCTAACCTCAAGGGGAAGACTCTTTCAGCCGCTCTCATGTCAGATGCTAAGTTTGATGGTGCAGACATGACAGAAGTGGTCATGTCCAAAGCTTATGCTGTCGGAGCTAGCTTCAAGGGAGTAGACTTCTCAAATGCAGTTCTAGATCGTGTCAATTTTGGAAAGGCCAATCTTCAGGGAGCTGTGTTTAAGAACACCGTGTTGTCGGGCTCCACCTTTGAGGAAGCTCAGCTGCAAGATGCTGTGTTTGAGGACACCATTATCGGTTACATTGATCTGCAGAAGCTGTGTACGAATAAAACCATCAGCGATGAAGTTAGACTTGAACTTGGATGTCGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_6950.p1 GENE.S_Transcript_6950~~S_Transcript_6950.p1 ORF type:complete len:235 (+),score=49.24,Pentapeptide|PF00805.18|5.7e+03,Pentapeptide|PF00805.18|2e-06,Pentapeptide|PF00805.18|1.5e-06,Pentapeptide|PF00805.18|6.1e-09,Pentapeptide_3|PF13576.2|0.00044,Pentapeptide_3|PF13576.2|6.9e-06,Pentapeptide_3|PF13576.2|8e-06,Pentapeptide_4|PF13599.2|2.3e+03,Pentapeptide_4|PF13599.2|0.005,Pentapeptide_4|PF13599.2|3.1e-10 S_Transcript_6950:2103-2807(+)
MATLGISLHPNGISIRNLSLKRLHFSAPKSTLRIYCSATGNGSGKENSSQLKELRSVAFGLLATWVITAASPVVAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPLDLRQCDYTNDKSNLKGKTLSAALMSDAKFDGADMTEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQGAVFKNTVLSGSTFEEAQLQDAVFEDTIIGYIDLQKLCTNKTISDEVRLELGCR*

Click here to download the sequence:
Link to NCBI Protein BLAST