Transcript Information: S_Transcript_6965.p1


Annotated TAIR IDAT5G22750.1
Annotated Gene NameDNA/RNA helicase protein
Annotated Gene Symbol(s)RAD5, RAD5A
Annotation TypeOrtholog
Chromosome Positionchr5:7565374-7570871 | Reverse length=1029
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0587968233351
Replicate 21.3996823482724
Replicate 30.79323596058497
Condition 2: 8 Hour
Replicate 11.3758316333634
Replicate 21.1546760588246
Replicate 31.6044186369341
Condition 3: 24 Hour
Replicate 11.5267929321383
Replicate 20.95041790481457
Replicate 31.0034576806336


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_6965.p1 GENE.S_Transcript_6965~~S_Transcript_6965.p1 ORF type:3prime_partial len:930 (+),score=194.56,SNF2_N|PF00176.19|7.2e-89,HIRAN|PF08797.7|1.9e-16,HIRAN|PF08797.7|1.1e+04,zf-C3HC4_3|PF13920.2|3.6e-10,zf-C3HC4|PF00097.21|1.9e-09,zf-RING_2|PF13639.2|4e-09,zf-C3HC4_2|PF13923.2|1.2e-07,zf-RING_5|PF14634.2|2.1e-06,zf-C3HC4_4|PF15227.2|7.6e-06,zf-RING_UBOX|PF13445.2|8.8e-06,zf-RING_UBOX|PF13445.2|1.6e+03 S_Transcript_6965:252-3038(+)
ATGATGAGCAACACCAAAGTAAAAGACGAAGCCATATCAACAGTACGATCAATAGTGGGTCAAGATTACACTGAAATGGACATACTTAGAGCCCTACACATGGCCAACGACGACGCTACAGGAGCAATCAACATAATCTTCGATACCCCCAATTTCATTTCGAAACCCCCAAGTCGTCAAAACGCTAGAATCGGCAATTTGAGCCGCAAGATCGAAGCACCGAGCACCGAACTGTTTTGTATCGAGGAGAGTGATAACTGTGATTCAATTACTAAGCATGAGGTTTTGACTGGAAATGGTGATCAAAGGAGAGACAAAGAGGATTCTGTTACAGTTAGTGGGAGTGAGTGGTGGTTTGTGGGATACGGTGAGATTTCTGGGATGTCAACTTGTAAAGGAAGGAGAATTAAGACCGGCGACAAGGTGGAGTTCGCGTTTCCGAAGAATAATAGGTTGAGTTCTCCGTCGCCAGGCAGGGTTTTTGGGAGGGGGAAACAGGTGGGAGTTTGTTCTGAGATTGTTAGGTTTTCCACAAAGGCTGGTGGAGAGGTAGGTCGGATACCGAATGAGTGGGCAAGGTGTTTGGTGCCTTTGGTTAGAGATAAGAAGATTAAAATTGAAGGATTTTGTAAATATGCTCCTGAAACTTTGAGTATTATGGACACCATTGCCTTAAACGTGAGTGTATATATAAACAGCGCATTGTTCCGGAAGCACCATCAGAATTCACTGAAAGCAAATGCTAACTCTAATTCCAATGAGGAATCTGTTATTCATCCCCTGCCAACTTTGTTTAAGCTGCTTGGGATAGTCCCTTTTAAGAAGGCAGAGTTCACTCCTGACAATTTATGCACACGGAAACGGCCTTTGACTTCTGAGGATGGTGCAGCTCTACACGCCTCATTGTTGAAGATTAAAAGTCCAAAGAATTTGCCGCCTAATGGAAATAAAAATGAAGAGGAGGAGGGTCAGGCTGTATCAGATTCTGATGTTGACACCATTGTTGGAGTTGGAGATAGCTCCAAGATGGAGGAAATGGAACCTCCAAGCACCCTTCAGTGTGAACTCCGCCCTTATCAAAAACAGGCACTTCACTGGATGGTCCATTTGGAGAAGGGGCAGACCATGGACGAGGCTGCAACTACCCTGCACCCATGTTGGGAAGCATATCACCTTGCTGACAAGAGGGATCTTGCTATCTACTTGAATTCATTTTCTGGTGAAGCCACGACAGAATTTCCAAGTACTCTTCAAATGGCAAGAGGAGGGATTTTGGCTGATGCTATGGGGCTTGGGAAGACTGTCATGACCATATCTCTCCTCCTTGCAAATTCAGAGAGAGCTAGATCACCTTCTAGTCAGTTGGCTAGCCAATCATCTGGAGAGAGTACTGAGCTCTGTGAAGCCATTGATGCCTCTCCAGATCCTCCTAAGAAGGCTGTAAAGTTTCAGGGATTTGATAAGCTATCAAGGCAAGAGAGTGTTCTCAGAGATGGTGGCAGTCTAATTGTTTGTCCTATGACACTCTTGAGTCAGTGGAAGACAGAGATTGAAACTCATGCTCAACCTGGTTGCCTATCTGTTTATGTTCATTATGGACAGAGCAGATCAAGGGATGCTGAACTTTTAGCTCAAAATGATGTTGTCCTCACTACCTATGGGCTGTTGACTTCAGAATTTACGTCTGAGAGTACTCAAGATCGTGGCGCTCTCTATTCTATACGGTGGTCAAGAGTTGTGCTTGATGAGGCACATACAATTAAGAACTCTAAAAGCCAAATTTCTATGGCTGCAGCTGCCTTGACAGCTGATCGTAGATGGTGTCTCACTGGCACTCCTATTCAGAACAATCTTGAGGACATATTCAGTCTTCTTCGGTTTCTGAAGGTGGAGCCATGGGGAAATTGGGCATGGTGGAACAAACTCATTCAAAAACCATTTGAAGAGGGTGATGAAAGAGGGTTGAAATTAGTGCAGTCCATTCTGAGACCGATAATGTTAAGAAGAACAAAGTATAGTGTTGACCGTGAAGGAAGGCCAATTTTAGTCCTTCCTCCAGCAAATGTTCAGGTGATTTACTGTGAGCTAACTGAAGCTGAAAAGGACTTCTACGAGGCTTTGTTTAAAAAATCTAAGGTGAAGTTTGATCAATTTGTTGAGCAAGGAAGAGTCCTGCATAATTATGCTTCTATATTGGAATTACTGTTACGACTGCGGCAATGTTGTGACCATCCGTTTCTTGTCATGAGTCGAGGTGATACAAAAGATTTTTCTGACCTGGATAAGCTTGCAAAACGTTTTCTGAGAGGTGGCCAAAGAGCTACTGAAGGTGAAGACAATGTTGTGCCATCAAAAGCATATATTCAGGAGGTTGTTGAAGAGCTACGGAAAGGGGAGCAGGGAGAATGCCCGATATGTCTTGAAGCTTTTGAAGATGCAGTATTGACTCCTTGTGCTCACCGCTTATGCCGAGAGTGTCTGTTGGCAAGTTGGCGAAATGCTGCTTCTGGTTTATGTCCTGTTTGCAGGAAAATAATAAGCAGGCAAGATCTCATCACAGCTCCAACTGAGAACAGATTTCAGATTGATGTTGAGAAAAATTGGGTTGAGTCAACTAAAGTCTCGTCATTATTACGTGAACTTGAAGATCTGCGTTCATCAGGATCGAAGAGCATCATCTTTAGCCAGTGGACTGCCTTCTTGGACCTATTACAGATACCACTTGCACAGAATAACATATCCTTTCTTCGTCTTGATGGAACTCTAAGTCAACAGCAACGTGAGAGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_6965.p1 GENE.S_Transcript_6965~~S_Transcript_6965.p1 ORF type:3prime_partial len:930 (+),score=194.56,SNF2_N|PF00176.19|7.2e-89,HIRAN|PF08797.7|1.9e-16,HIRAN|PF08797.7|1.1e+04,zf-C3HC4_3|PF13920.2|3.6e-10,zf-C3HC4|PF00097.21|1.9e-09,zf-RING_2|PF13639.2|4e-09,zf-C3HC4_2|PF13923.2|1.2e-07,zf-RING_5|PF14634.2|2.1e-06,zf-C3HC4_4|PF15227.2|7.6e-06,zf-RING_UBOX|PF13445.2|8.8e-06,zf-RING_UBOX|PF13445.2|1.6e+03 S_Transcript_6965:252-3038(+)
MMSNTKVKDEAISTVRSIVGQDYTEMDILRALHMANDDATGAINIIFDTPNFISKPPSRQNARIGNLSRKIEAPSTELFCIEESDNCDSITKHEVLTGNGDQRRDKEDSVTVSGSEWWFVGYGEISGMSTCKGRRIKTGDKVEFAFPKNNRLSSPSPGRVFGRGKQVGVCSEIVRFSTKAGGEVGRIPNEWARCLVPLVRDKKIKIEGFCKYAPETLSIMDTIALNVSVYINSALFRKHHQNSLKANANSNSNEESVIHPLPTLFKLLGIVPFKKAEFTPDNLCTRKRPLTSEDGAALHASLLKIKSPKNLPPNGNKNEEEEGQAVSDSDVDTIVGVGDSSKMEEMEPPSTLQCELRPYQKQALHWMVHLEKGQTMDEAATTLHPCWEAYHLADKRDLAIYLNSFSGEATTEFPSTLQMARGGILADAMGLGKTVMTISLLLANSERARSPSSQLASQSSGESTELCEAIDASPDPPKKAVKFQGFDKLSRQESVLRDGGSLIVCPMTLLSQWKTEIETHAQPGCLSVYVHYGQSRSRDAELLAQNDVVLTTYGLLTSEFTSESTQDRGALYSIRWSRVVLDEAHTIKNSKSQISMAAAALTADRRWCLTGTPIQNNLEDIFSLLRFLKVEPWGNWAWWNKLIQKPFEEGDERGLKLVQSILRPIMLRRTKYSVDREGRPILVLPPANVQVIYCELTEAEKDFYEALFKKSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTKDFSDLDKLAKRFLRGGQRATEGEDNVVPSKAYIQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNAASGLCPVCRKIISRQDLITAPTENRFQIDVEKNWVESTKVSSLLRELEDLRSSGSKSIIFSQWTAFLDLLQIPLAQNNISFLRLDGTLSQQQRER

Click here to download the sequence:
Link to NCBI Protein BLAST