Transcript Information: S_Transcript_6978.p1


Annotated TAIR IDAT4G19170.1
Annotated Gene Namenine-cis-epoxycarotenoid dioxygenase 4
Annotated Gene Symbol(s)NCED4, CCD4
Annotation TypeHomolog
Chromosome Positionchr4:10481835-10483622 | Forward length=595
E-Value1E-130
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.96091868075
Replicate 227.333057789052
Replicate 317.449333437411
Condition 2: 8 Hour
Replicate 10.54936602690507
Replicate 20.31435852889546
Replicate 31.0483203740155
Condition 3: 24 Hour
Replicate 137.601848631351
Replicate 227.971495786265
Replicate 329.770281920793


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_6978.p1 GENE.S_Transcript_6978~~S_Transcript_6978.p1 ORF type:3prime_partial len:427 (+),score=63.87,RPE65|PF03055.11|2.1e-65 S_Transcript_6978:100-1377(+)
ATGGATGCCTTCTCTTCTTCTCTAATTTCAGCATGGCTACCACAGCCAAAGCATGTTCAAATCCAACCTTCATCATTACCCCCTCAACTTAACATTTCTTCGGTCAAGACTGAAGATCTTCAAGCAACCCTGACCCCATCATCCACATACACATCAACTCCTTCCACATCGCCAAACACTCCAAAACACAAACCTTCTCCTGCTTCAAGACGCCAAGCCAAAAATGATATGTCAACAAGGAGGTTCAAAACTCCAGCACCAGTAGCTCTACCCAAACCTTCGTTTCAATCAACAATTTTAAACATATTAGATGATGTGATCAATAAGTTTGTGGATCCTCCAACACGGCAATCAGTAGATCCAAGATTTGTCCTCTCGGGAAACTTCGCTCCTGTGGAGGAGTGTCCTCCTACGGACTGTAAGGTCGTCGAGGGCGCCCTGCCCTCGTGCCTTGATGGGGCCTACATCCGTAATGGGCCCAACCCACAATTCCCTCCTCGTGGGCCCTATCACTTGTTTGATGGGGATGGAATGCTCCACTGCATTCGCATATCAAATGGCAAGGCCACCATATGCAGCCGCTATGTGAAGACGCACAAGTATGTGGCTGAGAATGAAGCAGGGATCAATCTCCTCCCCAACTTCTTCTCCGGGTACAATGGCCTTGTCGCATCCGTGGCCCGGGGAGCTTTAGTTTTCACCAGGAGAATCACTCGGCAGTATGATCCAACAAACGGTATTGGGACCGCCAACACTAACCTAGCCTTCTTTGGTAATCGTCTATACGCCTTGTATGAAGCAGACCTCCCTTACGAGGTACAAGTGACCCCAAATGGAGATATCAAAACCCTAGGTAGGTCCGACTTTGATGGAAAACTGTTCATGAGCATGACTGCACACCCTAAGATAGATCTTGAAACTGGTGAGGCCTTTGCTTTCCGTTATAGTGCCATCCCACCATTTCTCACCTACTTTAGATTTGACTCGGAAGGAAAGAAACAAGCAGACGTGCCTATTTTCTCAATGCTACGAGCATCGTTCATGCATGACTTTGCAATCACCAGGAAGTATGCTATATTTATTGAAACACAGATTGGGATGGACCCTATGGAGATCATAAGGGGTGGGTCTCCGGTGGCTTTTGACCCTACAAAGGTGTCAAGAATCGGAGTCCTCCCAAGGTATGCCACTGATGAGAAGGACATGAGGTGGTTTGAATTGCCGGGGTTCAATATACTCCATGCCTTCAATGCATGGGATGAAGTGGACGAGAATGGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_6978.p1 GENE.S_Transcript_6978~~S_Transcript_6978.p1 ORF type:3prime_partial len:427 (+),score=63.87,RPE65|PF03055.11|2.1e-65 S_Transcript_6978:100-1377(+)
MDAFSSSLISAWLPQPKHVQIQPSSLPPQLNISSVKTEDLQATLTPSSTYTSTPSTSPNTPKHKPSPASRRQAKNDMSTRRFKTPAPVALPKPSFQSTILNILDDVINKFVDPPTRQSVDPRFVLSGNFAPVEECPPTDCKVVEGALPSCLDGAYIRNGPNPQFPPRGPYHLFDGDGMLHCIRISNGKATICSRYVKTHKYVAENEAGINLLPNFFSGYNGLVASVARGALVFTRRITRQYDPTNGIGTANTNLAFFGNRLYALYEADLPYEVQVTPNGDIKTLGRSDFDGKLFMSMTAHPKIDLETGEAFAFRYSAIPPFLTYFRFDSEGKKQADVPIFSMLRASFMHDFAITRKYAIFIETQIGMDPMEIIRGGSPVAFDPTKVSRIGVLPRYATDEKDMRWFELPGFNILHAFNAWDEVDENG

Click here to download the sequence:
Link to NCBI Protein BLAST