Transcript Information: S_Transcript_70336.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value6E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.85480732018781
Replicate 21.2755788395137
Replicate 31.4217098479863
Condition 2: 8 Hour
Replicate 11.0046222419206
Replicate 20.91020369198031
Replicate 30.77595162587727
Condition 3: 24 Hour
Replicate 11.4968656781564
Replicate 21.2132661443441
Replicate 31.2421991891171


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_70336.p1 GENE.S_Transcript_70336~~S_Transcript_70336.p1 ORF type:3prime_partial len:467 (-),score=52.69,UBN2_3|PF14244.2|1.2e-19,UBN2|PF14223.2|3.7e-20,UBN2_2|PF14227.2|4.1e-10 S_Transcript_70336:1-1263(-)
ATGGCTATCTCAAACACAAACCTATTGCTCACAGCCTCAAACACTTTGGGGATCACTTCATTTCCCACTTTATCAATCAAATTAGACAGAGAAAATTATTTCCTATGGTGTAATAATGTCAAATCTGCACTTGAAGCCTTTGAATTAGATGGCTTCATTACTGGAGCCATTGTACCTCCGCCTGCTGAGATTCAAATCTCAGTTGAAGATGACCTATCACAGCCCTCACCAAATCCTGATTATATTACTTGGAGAAAGAAGGATAAGCTAGTCCTTCTATGGCTCAAAAGTACTATCACCGAACGCATACTCAACAACATAGCGCGGGCAACAACCGCACGAGATGCTTGGGTGACTCTTGAAAAAATCTTCCAATCCCAATCACGGGCAAGAGTGATGCAGATGCGGTGGAATCTTCAGACAATGGAGAAGGGATCTTTGTCGATCCTGGAATATATTGAAAAGAAACGAACACTGGCAGATACTCTAGCTTCTACTTCGAACCCGATTTCCGATGATGATCTTGTGAATTTCATTCTCTTTGGTCTAGATGAAGATTATTCCCCTTTTCGTTCCTCCATCAACACTCGTGTGGAGCCTGTTTCTGTAGATGAGCTGCTGGGTATGCTCCTCCAAGAGGAGGAAAGAATTCAACACTCACGAAAAGCACTCATGTCAGCAAATATCGTCGTCAAAGGTGGGTCTCAGCGCAATATGACTTCACATGGGAACCAGTTTGGTAAGAATACCTCCTCCTACACAAATAAGACCAAATCTAACAATTTTAAAGGCAATACTTATGGTGGGAATCAATCTGGGTCCCTCAAAAATGGATCGAACAAACCACGGGTTGTTTGTCAAATTTGCTCAAAACCCGGTCATACAGCACTTCAGTGTTACAATCGTTTCAATCATGCCTTTACCCCTGAAAAGCCATCAAAGCTCTCTGCTCTCATTGCCTCTTCTGACACCTCTTCGGATCCATCATGGTACATTGATTCAGGTGCCACAAATCATCTAACAGCAGATCTGAACAATCTTTCAATGCACTCCCCATTTACTGGAGATGATCAAATTGAAGTTGGTAATGGTATGGGTCTCTCAATTTCTCATATTGGACATTCTAGTCTTAAGAGCCATGGTGATTCTTTGCTTCTGAAAAATATTTTACATGTGCCAAAAATCACCAAAAATCTTTTAAGTGTATCACAATTTACTCGTGACAATAATGTTTCCATGGAATTTTATCCTAATATTTGTCTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_70336.p1 GENE.S_Transcript_70336~~S_Transcript_70336.p1 ORF type:3prime_partial len:467 (-),score=52.69,UBN2_3|PF14244.2|1.2e-19,UBN2|PF14223.2|3.7e-20,UBN2_2|PF14227.2|4.1e-10 S_Transcript_70336:1-1263(-)
MAISNTNLLLTASNTLGITSFPTLSIKLDRENYFLWCNNVKSALEAFELDGFITGAIVPPPAEIQISVEDDLSQPSPNPDYITWRKKDKLVLLWLKSTITERILNNIARATTARDAWVTLEKIFQSQSRARVMQMRWNLQTMEKGSLSILEYIEKKRTLADTLASTSNPISDDDLVNFILFGLDEDYSPFRSSINTRVEPVSVDELLGMLLQEEERIQHSRKALMSANIVVKGGSQRNMTSHGNQFGKNTSSYTNKTKSNNFKGNTYGGNQSGSLKNGSNKPRVVCQICSKPGHTALQCYNRFNHAFTPEKPSKLSALIASSDTSSDPSWYIDSGATNHLTADLNNLSMHSPFTGDDQIEVGNGMGLSISHIGHSSLKSHGDSLLLKNILHVPKITKNLLSVSQFTRDNNVSMEFYPNICL

Click here to download the sequence:
Link to NCBI Protein BLAST