Transcript Information: S_Transcript_70408.p1


Annotated TAIR IDAT5G06550.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:2001246-2003068 | Reverse length=502
E-Value2E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0974433499044
Replicate 21.1372571936863
Replicate 30.95065649915467
Condition 2: 8 Hour
Replicate 10.65954815413813
Replicate 20.23063761484254
Replicate 31.3185060374215
Condition 3: 24 Hour
Replicate 11.3512299066347
Replicate 21.168237710121
Replicate 31.5601264580484


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_70408.p1 GENE.S_Transcript_70408~~S_Transcript_70408.p1 ORF type:3prime_partial len:97 (+),score=16.74 S_Transcript_70408:118-405(+)
ATGTTAAGGTTCGGAAAACTGTTAGCTAAACCCCATAAAAGAAAAACCAAAAACAAAAATAACAAGACCAGAACAAAAAGAACCAGAATTCCTGTTTCCCAAGAAGACAATGGCATCATTCTTTCCGATAATCAACAACCCATTAATCATCATTCAGATGAAGAAGAAGCAGAAGCCGAAGCAGAAGAAGAAGGTTTCAGCTTGAAAACCACAGCTCCATCAAACTGCCATAGAGTACAACCACTGGGAAACCTTTACCTTTCCCCAAAATGCCATAACTCAAGGGAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_70408.p1 GENE.S_Transcript_70408~~S_Transcript_70408.p1 ORF type:3prime_partial len:97 (+),score=16.74 S_Transcript_70408:118-405(+)
MLRFGKLLAKPHKRKTKNKNNKTRTKRTRIPVSQEDNGIILSDNQQPINHHSDEEEAEAEAEEEGFSLKTTAPSNCHRVQPLGNLYLSPKCHNSRD

Click here to download the sequence:
Link to NCBI Protein BLAST