Transcript Information: S_Transcript_70611.p1


Annotated TAIR IDAT5G36170.1
Annotated Gene Namehigh chlorophyll fluorescent 109
Annotated Gene Symbol(s)HCF109, ATPRFB
Annotation TypeOrtholog
Chromosome Positionchr5:14236083-14237974 | Reverse length=456
E-Value4.2E-164
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 125.282351173421
Replicate 230.949190907069
Replicate 333.606763530117
Condition 2: 8 Hour
Replicate 142.887729415567
Replicate 245.365137519446
Replicate 341.80274558088
Condition 3: 24 Hour
Replicate 130.400796191077
Replicate 228.077944341808
Replicate 331.177249334102


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_70611.p1 GENE.S_Transcript_70611~~S_Transcript_70611.p1 ORF type:3prime_partial len:360 (+),score=85.86,PCRF|PF03462.14|4.4e+03,PCRF|PF03462.14|4.8e-55,RF-1|PF00472.16|2.1e+03,RF-1|PF00472.16|2.5e-17 S_Transcript_70611:173-1249(+)
ATGGAGGGAACTACACGAATAGTCTACCCAAATTCCTTTCCTATCTCCAACAAAACACCCTTGTTTTCCTTTGATTCCCAAAATCTTCGTATCTCTAATCACTTTGTCTCTTTTCCCAAGTTCAATTCTTTTTCCTCCTATCTCTTAACAACCCCATCTCGTTTCCCTTCTTCTCTTGCTCAATTTGCAACCCCAGATAGTCAAGTGAGTGCTGAGGTCAGCACTGAAACTAGGGAGTGGGCCATCCAAGATTTTTATACACTAAGAAAGGATGTTGAAAACACCAGTAAGCGCGTAGAAGAGATTGTAGTCTCTGCTGGATTGCAACATCTAGAGGGAGAGCTTGCAACTTTGGAGTCTAAAGCAGCTGACAGCAATTTGTGGGATGACCGTGCTAAGGCACAAGAAATTCTTTCAGCTTTGACTGGTGTCAAAGACAAAATAAAACTTCTCAAAGATTTCCAAAACCAGGTGGAAGAGGCTGAAACAATAGTTAATCTCACTGAAGAGATGGATTCTATTGATACTGCGCTTCTTCAAGAGGCTGCCAGCATTATTAAGGAATTAAACAAGGCTCTTGATCGTTTTGAATTGACACAGCTACTTTCTGGTCCATATGATAAAGAGGGGGCTGTTATCACTATCTCAGCTGGTGCTGGTGGCACTGATGCTCAGGATTGGGCTGACATGCTTCTCAGGATGTATATGAGATGGGCAGAAAAGCAAAAATATAAGGCTAAAGTGGTTGACAAATCACCAGGAGAGGAAGCAGGTATTAAATCGGCAACAGTTGAGGTTGAAGGCCGTTATGCTTATGGTTATCTTTCCGGAGAGAAAGGGACTCACCGAATTGTGAGGCAATCACCTTTTAATGCCAAGGGTCTTCGTCAGACAAGTTTTTCCGGTGTTGAAGTCATGCCTCTTCTTCCCGAAGATTCTATGAATGTTGAAATACCTGAAGAAGATCTGGAAATAAGTTTCTCGAGGGCAGGTGGAAGTGGTGGTCAGAATGTAAACAAGGTAGAAACAGCTGTCAGAATCACTCACATTCCCACTGGGGTAACAGTCCGATGCACA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_70611.p1 GENE.S_Transcript_70611~~S_Transcript_70611.p1 ORF type:3prime_partial len:360 (+),score=85.86,PCRF|PF03462.14|4.4e+03,PCRF|PF03462.14|4.8e-55,RF-1|PF00472.16|2.1e+03,RF-1|PF00472.16|2.5e-17 S_Transcript_70611:173-1249(+)
MEGTTRIVYPNSFPISNKTPLFSFDSQNLRISNHFVSFPKFNSFSSYLLTTPSRFPSSLAQFATPDSQVSAEVSTETREWAIQDFYTLRKDVENTSKRVEEIVVSAGLQHLEGELATLESKAADSNLWDDRAKAQEILSALTGVKDKIKLLKDFQNQVEEAETIVNLTEEMDSIDTALLQEAASIIKELNKALDRFELTQLLSGPYDKEGAVITISAGAGGTDAQDWADMLLRMYMRWAEKQKYKAKVVDKSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEDSMNVEIPEEDLEISFSRAGGSGGQNVNKVETAVRITHIPTGVTVRCT

Click here to download the sequence:
Link to NCBI Protein BLAST