Transcript Information: S_Transcript_70612.p1


Annotated TAIR IDAT5G36170.1
Annotated Gene Namehigh chlorophyll fluorescent 109
Annotated Gene Symbol(s)HCF109, ATPRFB
Annotation TypeOrtholog
Chromosome Positionchr5:14236083-14237974 | Reverse length=456
E-Value2E-147
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 170.21302453537
Replicate 265.812831829012
Replicate 373.14310651028
Condition 2: 8 Hour
Replicate 186.662756395158
Replicate 295.675352693299
Replicate 383.721392933608
Condition 3: 24 Hour
Replicate 158.37696524295
Replicate 259.793885861002
Replicate 364.074725573848


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_70612.p1 GENE.S_Transcript_70612~~S_Transcript_70612.p1 ORF type:5prime_partial len:235 (+),score=55.93,RF-1|PF00472.16|2.9e-36,PCRF|PF03462.14|7.5e-31,PCRF|PF03462.14|2.6e+02 S_Transcript_70612:3-707(+)
CAGGATTGGGCTGACATGCTTCTCAGGATGTATATGAGATGGGCAGAAAAGCAAAAATATAAGGCTAAAGTGGTTGACAAATCACCAGGAGAGGAAGCAGGTATTAAATCGGCAACAGTTGAGGTTGAAGGCCGTTATGCTTATGGTTATCTTTCCGGAGAGAAAGGGACTCACCGAATTGTGAGGCAATCACCTTTTAATGCCAAGGGTCTTCGTCAGACAAGTTTTTCCGGTGTTGAAGTCATGCCTCTTCTTCCCGAAGATTCTATGAATGTTGAAATACCTGAAGAAGATCTGGAAATAAGTTTCTCGAGGGCAGGTGGAAGTGGTGGTCAGAATGTAAACAAGGTAGAAACAGCTGTCAGAATCACTCACATTCCCACTGGGGTAACAGTCCGATGCACAGAGGAGAGAAGCCAGATGCAAAACAAGGTCAAGGCCCTAAATCGATTGAAGGCCAAACTTTTGGTCATTGCTGAAGAGCAAAGGGCATCAGAGATCAAGCAGATCAGGGGAGATGCTGTGAAGGCCGAATGGGGTCAGCAAATAAGGAATTATGTATTCCACCCTTACAAGCTCGTGAAAGATGTACGGAGTGGATATGAAACTTCAGACATTGCTTCTGTAATGGATGGTGAATTAGATCCCTTCATTAAATCTTATCTGAAGCATAAATATAGCCAGATGTTATCGACAAGTACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_70612.p1 GENE.S_Transcript_70612~~S_Transcript_70612.p1 ORF type:5prime_partial len:235 (+),score=55.93,RF-1|PF00472.16|2.9e-36,PCRF|PF03462.14|7.5e-31,PCRF|PF03462.14|2.6e+02 S_Transcript_70612:3-707(+)
QDWADMLLRMYMRWAEKQKYKAKVVDKSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEDSMNVEIPEEDLEISFSRAGGSGGQNVNKVETAVRITHIPTGVTVRCTEERSQMQNKVKALNRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRSGYETSDIASVMDGELDPFIKSYLKHKYSQMLSTST*

Click here to download the sequence:
Link to NCBI Protein BLAST