Transcript Information: S_Transcript_70613.p1


Annotated TAIR IDAT5G36170.1
Annotated Gene Namehigh chlorophyll fluorescent 109
Annotated Gene Symbol(s)HCF109, ATPRFB
Annotation TypeOrtholog
Chromosome Positionchr5:14236083-14237974 | Reverse length=456
E-Value4.1E-86
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0235769705839
Replicate 21.8385657964596
Replicate 33.1920120144693
Condition 2: 8 Hour
Replicate 12.7340243996324
Replicate 21.577502147673
Replicate 33.416001218747
Condition 3: 24 Hour
Replicate 11.260281739842
Replicate 22.4697743384481
Replicate 33.5569549802087


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_70613.p1 GENE.S_Transcript_70613~~S_Transcript_70613.p1 ORF type:5prime_partial len:156 (+),score=31.73,PCRF|PF03462.14|3e-31,RF-1|PF00472.16|3.6e-18 S_Transcript_70613:3-470(+)
CAGGATTGGGCTGACATGCTTCTCAGGATGTATATGAGATGGGCAGAAAAGCAAAAATATAAGGCTAAAGTGGTTGACAAATCACCAGGAGAGGAAGCAGGTATTAAATCGGCAACAGTTGAGGTTGAAGGCCGTTATGCTTATGGTTATCTTTCCGGAGAGAAAGGGACTCACCGAATTGTGAGGCAATCACCTTTTAATGCCAAGGGTCTTCGTCAGACAAGTTTTTCCGGTGTTGAAGTCATGCCTCTTCTTCCCGAAGATTCTATGAATGTTGAAATACCTGAAGAAGATCTGGAAATAAGTTTCTCGAGGGCAGGTGGAAGTGGTGGTCAGAATGTAAACAAGGTAGAAACAGCTGTCAGAATCACTCACATTCCCACTGGGGTAACAGTCCGATGCACAGGTCAGGCCTTACTGCTTTGTAAATCCTTAAACATTTACGCAATGATGGATTACTTGCCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_70613.p1 GENE.S_Transcript_70613~~S_Transcript_70613.p1 ORF type:5prime_partial len:156 (+),score=31.73,PCRF|PF03462.14|3e-31,RF-1|PF00472.16|3.6e-18 S_Transcript_70613:3-470(+)
QDWADMLLRMYMRWAEKQKYKAKVVDKSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEDSMNVEIPEEDLEISFSRAGGSGGQNVNKVETAVRITHIPTGVTVRCTGQALLLCKSLNIYAMMDYLP*

Click here to download the sequence:
Link to NCBI Protein BLAST