Transcript Information: S_Transcript_70689.p1


Annotated TAIR IDAT3G54890.1
Annotated Gene Namephotosystem I light harvesting complex gene 1
Annotated Gene Symbol(s)LHCA1
Annotation TypeOrtholog
Chromosome Positionchr3:20339706-20340922 | Reverse length=241
E-Value4.1E-122
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11200.8033720116
Replicate 21426.282381674
Replicate 31644.5773776502
Condition 2: 8 Hour
Replicate 11421.2628737405
Replicate 21382.3721357152
Replicate 31422.2131808998
Condition 3: 24 Hour
Replicate 11327.7624997911
Replicate 21364.1506307419
Replicate 31302.3959859795


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_70689.p1 GENE.S_Transcript_70689~~S_Transcript_70689.p1 ORF type:complete len:215 (+),score=42.37,Chloroa_b-bind|PF00504.17|1.3e-37 S_Transcript_70689:341-985(+)
ATGGCTTCCAATGCCTTAATGAGCTGTGGCATCAATGCTGCCGTTTTCCCCTCTTCTCTCTCCTCCTCTAAATCGAAATTCGCGGCCTCTGTGCCTTTGGCAAATGTATCATGCAAAGCATCATCTAGGTTCACCATGTCTGCAGAGTGGATGCCTGGCGAGCCTAGACCACCTTACCTTGATGGATCAGCTCCCGGTGATTTTGGGTTCGACCCACTTCGGCTAGGGGAAGTACCCGAGAATCTGGAGAGGTTCAAGGAGTCTGAGCTCATCCATTGCAGATGGGCAATGCTTGCTGTTCCAGGGATCTTAGTACCTGAGGCCTTGGGATTAGGCAATTGGGTGAAAGCTCAAGAATGGGCAGCACTGCCAGGAGGTCAAGCCACATACTTGGGGAACCCAGTGCCATGGGGAAACCTGCCTACCATTTTGGCTATAGAGTTCCTTGCCATCGCCTTCGTAGAGCACCAACGGAGCATGGAGAAAGACCCTGAAAAGAAGAAGTACCCTGGTGGAGCTTTCGACCCTTTGGGTTACTCTAAGGACCCTAAGAAATTCCACGAATTGAAAGTCAAGGAGATTAAGAATGGTAAACATTGCTATTCTCCTTTCAAATCCATACCATTTGATCAAATTCATTCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_70689.p1 GENE.S_Transcript_70689~~S_Transcript_70689.p1 ORF type:complete len:215 (+),score=42.37,Chloroa_b-bind|PF00504.17|1.3e-37 S_Transcript_70689:341-985(+)
MASNALMSCGINAAVFPSSLSSSKSKFAASVPLANVSCKASSRFTMSAEWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHELKVKEIKNGKHCYSPFKSIPFDQIHS*

Click here to download the sequence:
Link to NCBI Protein BLAST