Transcript Information: S_Transcript_71255.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value1E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.691904308343
Replicate 212.123764415148
Replicate 310.571777587671
Condition 2: 8 Hour
Replicate 17.733056460885
Replicate 29.9222424929331
Replicate 310.791705272815
Condition 3: 24 Hour
Replicate 19.7494598563321
Replicate 211.063227408259
Replicate 312.312016097337


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_71255.p1 GENE.S_Transcript_71255~~S_Transcript_71255.p1 ORF type:complete len:717 (+),score=124.89,UBN2_2|PF14227.2|1e-32,rve|PF00665.22|1.9e+03,rve|PF00665.22|5.1e-26,UBN2|PF14223.2|5.4e-19,gag_pre-integrs|PF13976.2|4.2e-15 S_Transcript_71255:506-2656(+)
ATGGCCGATGAGAAGATTGAATTCGAGAAGTTCAATGGTAAAGATTTTGGATATTGGAAGATGCGGGTAGAGGATCTTCTATATCGCAAAAGTCTTCACTTGCCATTGTCAGGACAGCCGAAAGACATGGAGGATGCAAAGTGGGCATTGCTGGATAGGCAAGCGCTAGGTGAGATCCGGTCGACGTTGTCAAGGAACGTTGCGTTCAACGTCAAGGATGTGAAAACGACGGCACAACTCATGTCTACCTTGGAGAACATGTATGAGAAACCCTCGGCAGTAAACAAGGTATATCTTATGCGTCGTTTATTTGAATTAGAGATGGTAGATGGTTCCTCAGCTGCTGAACATGTTAATAACTTTAAAGCTGTGATTAGTCAACTGTCCTCTGTTTCCATTAGTTTTGATGATGAGGTGCAAGCCTTGATTTTGTTATCTTCCCTACCAAAATCGTGGGATACTATGGTTAGTGCTATTAGTAATTCCACGGGAAAACAGAAACTGAAACTTAATGATGTTATTGACTTGGTGTTGAGTGAATGTCTTCGCCGGAAAGAGTCAGGGGTTGAGTATTCAGGAGGGGCATATAGTGCTGATAACCGGGGTAGGGGAAAACAAAGGAACAAGGAGGGCCATCATGGGAGAGGGAAGTCAAAGGGCAGGAGTAAATCCAGGGGCAGGGCTGAGATGATCTGTTGGAACTGTAACGGGAAGGGGCATCCCAAAAGAGAGTGTCCAAAACTCAGAAAGAAGGGAGCCGGTCCTAGTAGCAGTGGCCAACAGGAAAGTGATAGTGACGCTTCGGTTAATTCTGCTATAGAAGAGTCGTGGTTACAGGATGCTTTGATCTTGAGTGTTGATAGTCCAGTTGAGTCCTGGATATTAGATTCAGGGGCATCATTCCATTCTTCACCATGCAAGGAGTTGTTTAAGAACTTTCAGACTGGAAAGTTCGGTAGAGTTTATCTGGCTAATGGTAAACCTCTAGAGATTACTGGGAAGGGGGATGTAAGGATTAAAACTTCAAGTGGGAGCATCTGGGAGCTGCAGGATGTTAGGTTCATACCGGGACTAAACAAAAATCTGATTTCGGTGGGGCAGTTAGATGCCAGTGGGTACAGAACTGTGTTCAGTGAGGGTGCTTGGAAGGTTTCTCGGGGTGCTATGGTGATTGCACGGGGTCCCAAGACAGGCACATTATACACTACTGCAGGGTGTGAGAACATGGTTGCTGCTACCACAAGAGATGAGGTCAAGCTTTGGCACAATAGGCTTGGCCACATGAGTGAGAAAGGGATGAAAATTATGGCTTCGAGACGTAAACTTTCCAATGTGAAATCAGTTGATCTTGAGGTTTGTGAGAGTTGTGTGATGGGGAAGCAGAAGAGAGTTACTTTCACAAAGAACAAGAGAGAGTTGAGAAAGGAGAAGCTGGAGTTGGTGCACACTGACGTATGGGGTCCATACCACACAAAATCCCTTGGAGGCTCACAGTATTTTGTCACCTTTATTGATGACTTCAGCAGGAAGGTGTGGGTCTACTTCCTGAAACAAAAATCCGAGGTGTTTGAGACTTTTAAAGTCTGGAGAGCTGAAGTCGAGAATCAGACTGGGAAGAAGATCAAAACTTTGAGGTCTGACAATGGAGGTGAGTATGATGATAAACAATTCATCAAATATTGTGCAGATAATGGCATCAGACTGGCAAGGACAGTACCGGGGAAAGCTCGTCAGAACGGGGTTGCTGAGAGGATGAACAGGACACTGCTGGAACGCGCTAGAAGCATGAGAATACACGCAGGAATGCCCAAGTGTATATGGGCGGAAGCAGTTCAGACAGCAGCATATCTAATCAACCGAGGTCCATCTGTTCCTTTGGACTTCAAGATTCCAGAAGAGGTATGGTTAGGTAAAGATATAGATCTTACCCACCTTAAAACTTTTGGGTGTGTTGGTTATGTTCATTCTGAAACCCGGGACAAATTAGATCCAAGGGCCATTAAATGTTTTTTCATTGGTTATGGTGATAATTATTTTGGTTATAGACTGTGGGATGTGAAAAATGGAAAAACTGTTAGGCATTGTGATGTAACTTTTGATGAGAGTGTTTTGTATAAAGATTGTTTGAGATGTTCAAATGTATTTGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_71255.p1 GENE.S_Transcript_71255~~S_Transcript_71255.p1 ORF type:complete len:717 (+),score=124.89,UBN2_2|PF14227.2|1e-32,rve|PF00665.22|1.9e+03,rve|PF00665.22|5.1e-26,UBN2|PF14223.2|5.4e-19,gag_pre-integrs|PF13976.2|4.2e-15 S_Transcript_71255:506-2656(+)
MADEKIEFEKFNGKDFGYWKMRVEDLLYRKSLHLPLSGQPKDMEDAKWALLDRQALGEIRSTLSRNVAFNVKDVKTTAQLMSTLENMYEKPSAVNKVYLMRRLFELEMVDGSSAAEHVNNFKAVISQLSSVSISFDDEVQALILLSSLPKSWDTMVSAISNSTGKQKLKLNDVIDLVLSECLRRKESGVEYSGGAYSADNRGRGKQRNKEGHHGRGKSKGRSKSRGRAEMICWNCNGKGHPKRECPKLRKKGAGPSSSGQQESDSDASVNSAIEESWLQDALILSVDSPVESWILDSGASFHSSPCKELFKNFQTGKFGRVYLANGKPLEITGKGDVRIKTSSGSIWELQDVRFIPGLNKNLISVGQLDASGYRTVFSEGAWKVSRGAMVIARGPKTGTLYTTAGCENMVAATTRDEVKLWHNRLGHMSEKGMKIMASRRKLSNVKSVDLEVCESCVMGKQKRVTFTKNKRELRKEKLELVHTDVWGPYHTKSLGGSQYFVTFIDDFSRKVWVYFLKQKSEVFETFKVWRAEVENQTGKKIKTLRSDNGGEYDDKQFIKYCADNGIRLARTVPGKARQNGVAERMNRTLLERARSMRIHAGMPKCIWAEAVQTAAYLINRGPSVPLDFKIPEEVWLGKDIDLTHLKTFGCVGYVHSETRDKLDPRAIKCFFIGYGDNYFGYRLWDVKNGKTVRHCDVTFDESVLYKDCLRCSNVFE*

Click here to download the sequence:
Link to NCBI Protein BLAST