Transcript Information: S_Transcript_72259.p1


Annotated TAIR IDAT2G40316.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 27 (InterPro:IPR018939); Has 138 Blast hits to 138 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 62; Plants - 33; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:16836355-16838688 | Forward length=276
E-Value4E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.9839003705541
Replicate 29.1009006924749
Replicate 36.9160260313502
Condition 2: 8 Hour
Replicate 110.662695158566
Replicate 29.5080356718838
Replicate 312.256612372864
Condition 3: 24 Hour
Replicate 14.3689766981188
Replicate 27.6490364070172
Replicate 37.2513377664709


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_72259.p1 GENE.S_Transcript_72259~~S_Transcript_72259.p1 ORF type:5prime_partial len:80 (-),score=2.65,ATG27|PF09451.6|2.5e-10 S_Transcript_72259:3-242(-)
GGATGGGGTTGGTTTGGTGTTCTTTTGACAATATTATTATGTATCCTTGTAGCCTACCTGCTGATTGGTGCAGTGTACCAGTATTTCTTCCTTGGAATTCGGGGTTTAGATGTTATTCCAAACTTAGACTTTTGGATTAGCATACCACATAGAACAAAGACTTTATTCATGTCATTGGTGCAAAGGTTTAGAGGGCCTACTTACCACCACAGAAGCTCTTATTCACCTGTTAACTTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_72259.p1 GENE.S_Transcript_72259~~S_Transcript_72259.p1 ORF type:5prime_partial len:80 (-),score=2.65,ATG27|PF09451.6|2.5e-10 S_Transcript_72259:3-242(-)
GWGWFGVLLTILLCILVAYLLIGAVYQYFFLGIRGLDVIPNLDFWISIPHRTKTLFMSLVQRFRGPTYHHRSSYSPVNF*

Click here to download the sequence:
Link to NCBI Protein BLAST