Transcript Information: S_Transcript_72578.p1


Annotated TAIR IDAT1G08190.1
Annotated Gene Namevacuolar protein sorting 41
Annotated Gene Symbol(s)ATVPS41, ZIP2, VPS41, ATVAM2, VAM2
Annotation TypeOrtholog
Chromosome Positionchr1:2567652-2573142 | Forward length=980
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.78774819108
Replicate 212.036349067503
Replicate 312.571959361701
Condition 2: 8 Hour
Replicate 116.055450929862
Replicate 215.672007057568
Replicate 315.735782786923
Condition 3: 24 Hour
Replicate 115.508723567144
Replicate 213.811872604643
Replicate 312.756280049917


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_72578.p1 GENE.S_Transcript_72578~~S_Transcript_72578.p1 ORF type:complete len:955 (+),score=180.31,Clathrin|PF00637.16|22,Clathrin|PF00637.16|95,Clathrin|PF00637.16|4.3e-21 S_Transcript_72578:169-3033(+)
ATGTCCCCATTCCCGACGGAAAACGGCGTCGAAGGCGACGACGAGCGAGAAGAACCAGAACTATACGACGACGATGAATTCTCTCACGACGAAGATGAAGATGAAGATGACGATGACGAAGAAGAAGATGAGCCGAAGCTCAAGTACCAGAGAATGGGAGGGAGTTTGTCTTCTTTATTGACTACTGATGCTGCCTCTTGTATATCCGTCTCTGAACGAATGATCGCTCTTGGTACTCACGTTGGCACCGTTCACATACTGGATTTTCTCGGCAATCAGATTAAGGAATTACCTGCACACAAAGCGGCTGTCAATGGCCTTAGCTTTGACATAGATGGTGAATTTATAGGAAGTTGCTCAGATGATGGATCAGTTGTTATAAATAGCCTTTTTACTGATGAAAGACGGAAGTTTGAATATCATAGACCGATGAAGGCTATCGCTCTTGATCCTGATTATGCAAGAAAATCGTCAAGCAGATTTGTGGCTGGTGGATTAGCTGGTCAACTGATATTCTACACAAAAAAGTGGTTTGGATATCAGGAGCAGGTATTGCACTCTGGTGAGGGTCCAATACATGCAGTAACATGGAGGACTAGTCTTATTGCTTGGGCTAATGATGCAGGCGTGAAAGTTTATGACACTGCCACTGATCAGCGTGTGACTTTTATTGAGAGACCGCGTGGAAGTCCACATCCTGAACTGGTGCTTCCACATGTGGTTTGGCAGGATGATACACTTTTGATCATTGGTTGGGGCACATCTGTAAAGATTGCTTCGTTAAGAGCCAACAGACACGGGGGCACCAATGGCTCGAATAAGCCTATACCTATGTCAAGTCTGAGCCAGGTGGATATTGTTGCATCTTTCCAAACAAACTACTATATTTCAGGTATTGCTCCATTTGGTGATTCGTTGGCTATTCTAGCGTATATTCCTGGAGAAGAAGATGGAGAGAAGGACTTTAGTAGCACAGCTCCGCCACGACAGGGCAATGCACAAAGACCGGAAGTACGTGTCGTGACATGGACAGATGATGAACTCGCAACTGATGCATTGCCTGTTCATGGTTTTGAACATTATAAAGCAAAAGATTATGCTCTTTCATATACTCCCTTCTCAGGGAACAGCTATGTCAATGGCCGGTGGGTAATTGGTGATGAGCCACTATACTATATTGTGTCGCCAAAGGACATCGTTATTGCTAAGCCAAGGGATACTGAAGATCATATCAATTGGCTTCTTGAACATGGCCGGTATGATAAAGCTCTAGCTGAAGTTGAAGCAACACAAGGACGGAAAGAACTTTTTGAAGAGGTGGGATCGAGATACCTTGAACATCTACTTGCTGAGAAAAAATATGCTGATGCTTCATCGTTGTGTCCAAAATTGTTACAAGGGTCTGCATCAGCATGGGAAAGGTGGATTATCCGCTTCGCTCAGCTGCGCCAGCTTCCAGTATTAGTTCCTTACATGCCAACAGAAAACCCTAAACTGAGTGATACTTTGTATGAGCTTGCACTTGTAGCACTTGCAATGAATCCTGCTTACCACAAGGATTTTTTATCAGCTGTAAAGACTTGGCCAAGGTCTGTATATTCTGTACTACCTGTTCTGTCCGAGATAGAACCTCAGCTTAGAGCATCTTTGATGACTGACCCTCTCAAAGAGGCACTGGGTGAATTATATGTAAGGACTGGGCAAAATGAGAAAGCTTTTTCGTTCTTTGCTGATTTACTGAAGCCAGAGGTATTTGACTTCATCGAAAAACATAATCTGCATGATGCTATCCGTGAAAAGGTTGTGCAATTGATGATGCTTGATAGCAAACGTGCAACCTCCTTACTGATCCAGCAAAGGGATTTAATTACACCATCTGATGTAGTATCACAGCTTTTAAAGGCTGGGGATAAATGTGATTTCAGATACTTTTTGTATCTATATTTGCATTCCTTATTTGAGGTCAATCCACATGCTGGCAAGGATTTCCATGACATGCAGGTGGAGCTGTATGCAGAGTATGATCCAAAAATGCTACTTCCTTTCCTTCGTAGCAGTCAGCATTATACTCTGGAAAAAGCATATGAGATTTGCACGAGAAAAGGTCTCCTGAAAGAGAAGGCATTCATACTTGGAAGAATGGGAAATTCAAAGCAAGCCCTTTCTGTTATCATCAATGAATTGGGTGATATGGAAGAGGCTTTAGAATTTGCTAATATGCAGAACGATGATGAAATTTGGGACGAACTGATCAAACAGTCTACCCAGAGGCCTGAAATGGTTGGTATGTTGTTGGAGCATACAGTGGGCAACCTTGATCCCCTTCACATTGTAAATGTGGTGCCTGATGGCCTTGAAATACCTCGGCTGAGAGATCGGCTAGTTAAAATCATTACTGACTATCGAACAGAAACTTCTCTTAGACATGGTTGCAATGATATTCTAAAGGCTGATATTGTCAATTTGTTGGTCAAATACTACAAAGAAGCAAGGCATGCAATTTATTTGAGCAACGAAGAAGATGAAGCACGAGCTAAAAGGGATGATAATCGTATGGCCAAGTCCTCTGCAAGAGCACCAATTTTGAGGAACATGGGCCTAAAGTCAAAGACTAGAGCAGGTGGCCGGTGTTGCATGTGTTTTGATCCTATCACCATTCAAAATGTCTCCGTAGTGGTTTTCTTTTGCTGTCATGCTTATCACATGACTTGCTATATCGACTCTGCCAATACATTTAGCGACGAGAAAGGGCCACAAGATTCAGTTTCAGAGTATGATGAATATGATGATGAGGTAGAAGATGATGAAAATGAATCAGATTACCCACGGATGAGGTGTATATTGTGTACTAACGCAACTAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_72578.p1 GENE.S_Transcript_72578~~S_Transcript_72578.p1 ORF type:complete len:955 (+),score=180.31,Clathrin|PF00637.16|22,Clathrin|PF00637.16|95,Clathrin|PF00637.16|4.3e-21 S_Transcript_72578:169-3033(+)
MSPFPTENGVEGDDEREEPELYDDDEFSHDEDEDEDDDDEEEDEPKLKYQRMGGSLSSLLTTDAASCISVSERMIALGTHVGTVHILDFLGNQIKELPAHKAAVNGLSFDIDGEFIGSCSDDGSVVINSLFTDERRKFEYHRPMKAIALDPDYARKSSSRFVAGGLAGQLIFYTKKWFGYQEQVLHSGEGPIHAVTWRTSLIAWANDAGVKVYDTATDQRVTFIERPRGSPHPELVLPHVVWQDDTLLIIGWGTSVKIASLRANRHGGTNGSNKPIPMSSLSQVDIVASFQTNYYISGIAPFGDSLAILAYIPGEEDGEKDFSSTAPPRQGNAQRPEVRVVTWTDDELATDALPVHGFEHYKAKDYALSYTPFSGNSYVNGRWVIGDEPLYYIVSPKDIVIAKPRDTEDHINWLLEHGRYDKALAEVEATQGRKELFEEVGSRYLEHLLAEKKYADASSLCPKLLQGSASAWERWIIRFAQLRQLPVLVPYMPTENPKLSDTLYELALVALAMNPAYHKDFLSAVKTWPRSVYSVLPVLSEIEPQLRASLMTDPLKEALGELYVRTGQNEKAFSFFADLLKPEVFDFIEKHNLHDAIREKVVQLMMLDSKRATSLLIQQRDLITPSDVVSQLLKAGDKCDFRYFLYLYLHSLFEVNPHAGKDFHDMQVELYAEYDPKMLLPFLRSSQHYTLEKAYEICTRKGLLKEKAFILGRMGNSKQALSVIINELGDMEEALEFANMQNDDEIWDELIKQSTQRPEMVGMLLEHTVGNLDPLHIVNVVPDGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADIVNLLVKYYKEARHAIYLSNEEDEARAKRDDNRMAKSSARAPILRNMGLKSKTRAGGRCCMCFDPITIQNVSVVVFFCCHAYHMTCYIDSANTFSDEKGPQDSVSEYDEYDDEVEDDENESDYPRMRCILCTNATK*

Click here to download the sequence:
Link to NCBI Protein BLAST