Transcript Information: S_Transcript_72827.p1


Annotated TAIR IDAT5G46420.1
Annotated Gene Name16S rRNA processing protein RimM family
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:18829999-18832893 | Forward length=653
E-Value9E-110
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.7461589131359
Replicate 21.2887143433128
Replicate 31.4219866606514
Condition 2: 8 Hour
Replicate 10.89686220959905
Replicate 21.0976841622296
Replicate 31.5439048498935
Condition 3: 24 Hour
Replicate 10.96974950075068
Replicate 21.5885849235758
Replicate 30.29465005146164


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_72827.p1 GENE.S_Transcript_72827~~S_Transcript_72827.p1 ORF type:3prime_partial len:428 (+),score=89.80,RimM|PF01782.14|6.2e-18,PRC|PF05239.12|7e+03,PRC|PF05239.12|9.1e-12,PRC|PF05239.12|1.6e+04 S_Transcript_72827:81-1361(+)
ATGATGGTACTACAGAGCTCATTCTCTTTCATATGCTCTTCAAATTATCTAACTTCAACAACAAATTCACATTATGGTAGACTCCTTAATATACCCTTTCACAATCCATGCCTTACTCCAAATTTAAACCCCTCTTCTCGTGTCACTCTTTTGCCCTTGAACAGAGTCCAAGCTGCTGGTCATGGGCTCAGAGCCCCTCCCCTTTGTTGCACTGCTACTGAAGAGATTGTAGAGACAAGTGATGGACAGTTGGACTTTATTGAGATTGGGTACATATCTGATGTGCATGGGCTTCAGGGAGAGATTCGTGTAAAGCATAACACTGATTTCCCCGACTTGCGTTTTGGACAGCCTGGGAGAAAATGGTTGCGGCAGGAATATTCCGGGAGACAAAAAGTTTTTGAAGTTGAGCTTGTGACAGGAAGAGGCCATCCTGGGGACAAGAGTTGGATAGTCAAATTGAGTGGCTTTGACAGTATAGATCAGGCTAAACAGCTTGTTGGATCAACATTTCTTGTGAGGGAAAGTGACAGACCAGAGCTTGAGGAGGGCGAATTTTATAGTCGCGATCTTGTTGGCATGAGAGTTATTCTCAAGGACACAGGTGAAGTGGTAGGAACTGTTGTTAATGTCTTCAATAGTGGTGGCAATGATCTCTTGCACGTCATACTTGATTCTTCCACTGAGAATTCTGGGACATCTGAATCAGGCCAGCTTATCTGGATCCCATTTGTTGAAGCAATTGTTCCAGATGTTAATTTGGATAGAAGAGAGATGCAGATTACCCCTCCCAAAGGACTTCTTCAGTTAAATATACGCTCTGATGAGAGGTCCAAGAAAGAAAGACGTTTACTTGATTGGAAAGAAAGAAAGAAGTTTCAAAGGCGCCTTATTGCTGCGAAAAAGAAATTGTGTGAGTTGGAGCAGCAACACATCTTTGACGGGCTTAGATACGGAGAAAAATCCCAAAGGAGCTTGCTCGCAGAGCAAATTGTTTCCGTGAATTCAAGTCTGCTTCAGCAAGCACTTCAAGCCATTCAGGTGCCTAATAATGGATCTAATATGAGGGGCTTCGTGCATGCCGCTACGCAATTGAAAAGTCTGAGTTCCTTGAAGATAGCTGAGCAACACCTTGCAAGTGTTGGCAAAGAGAAGCTAGGTGTATACTCTAATCATAGAGAAACTGGACTTCATCTCCTCTCTGAAGGCAAAGTTGCAACCGTATTAGTACTGAACAGTGGAGAACCAGAGAAATTCTCTGAGACTGATCTTGGAGATACT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_72827.p1 GENE.S_Transcript_72827~~S_Transcript_72827.p1 ORF type:3prime_partial len:428 (+),score=89.80,RimM|PF01782.14|6.2e-18,PRC|PF05239.12|7e+03,PRC|PF05239.12|9.1e-12,PRC|PF05239.12|1.6e+04 S_Transcript_72827:81-1361(+)
MMVLQSSFSFICSSNYLTSTTNSHYGRLLNIPFHNPCLTPNLNPSSRVTLLPLNRVQAAGHGLRAPPLCCTATEEIVETSDGQLDFIEIGYISDVHGLQGEIRVKHNTDFPDLRFGQPGRKWLRQEYSGRQKVFEVELVTGRGHPGDKSWIVKLSGFDSIDQAKQLVGSTFLVRESDRPELEEGEFYSRDLVGMRVILKDTGEVVGTVVNVFNSGGNDLLHVILDSSTENSGTSESGQLIWIPFVEAIVPDVNLDRREMQITPPKGLLQLNIRSDERSKKERRLLDWKERKKFQRRLIAAKKKLCELEQQHIFDGLRYGEKSQRSLLAEQIVSVNSSLLQQALQAIQVPNNGSNMRGFVHAATQLKSLSSLKIAEQHLASVGKEKLGVYSNHRETGLHLLSEGKVATVLVLNSGEPEKFSETDLGDT

Click here to download the sequence:
Link to NCBI Protein BLAST