Transcript Information: S_Transcript_72832.p1


Annotated TAIR IDAT5G46420.1
Annotated Gene Name16S rRNA processing protein RimM family
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:18829999-18832893 | Forward length=653
E-Value5.9E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2337152890481
Replicate 21.1688895129809
Replicate 32.1984718510252
Condition 2: 8 Hour
Replicate 12.5420995080026
Replicate 22.5186849461944
Replicate 32.6821265198321
Condition 3: 24 Hour
Replicate 10.57867241034687
Replicate 21.9511890761094
Replicate 31.3362672532512


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_72832.p1 GENE.S_Transcript_72832~~S_Transcript_72832.p1 ORF type:5prime_partial len:151 (+),score=29.89,RimM|PF01782.14|3.3e-07 S_Transcript_72832:2-454(+)
CCTGGGAGAAGATGGTTGCGGCAAGAATGTTCTGGGAGACAAAAAGTTTTTGAAGTTGAGCTTGTGACAGGAAGAGGCCATCCTGGGGACAAGAGTTGGATAGTCAAATTGAGTGGCTTTGACAGTATAGATCAGGCTAAACAGCTTGTTGGATCAACATTTCTTGTGAGGGAAAGTGACAGACCAGAGCTTGAGGAGGGCGAATTTTATAGTCGCGATCTTGTTGGCATGAGAGTTATTCTCAAGGTGAAGTGGTGGGAATTGTTGTTAATGTCTTCAATAATGGTGGCAATGATCTCTTACACGTCATGCTTGCTTCTTCCACTGAGAATTCTGGGACATCTGAATCAGGCCAGCTTATCTGGATCCCATTTGTTGAAGCAATTGTTCCAGATGTTAATTTGGATAGAAGAGAGATGCAGATTACCCCTCCCAAAGGACTTCTTCAGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_72832.p1 GENE.S_Transcript_72832~~S_Transcript_72832.p1 ORF type:5prime_partial len:151 (+),score=29.89,RimM|PF01782.14|3.3e-07 S_Transcript_72832:2-454(+)
PGRRWLRQECSGRQKVFEVELVTGRGHPGDKSWIVKLSGFDSIDQAKQLVGSTFLVRESDRPELEEGEFYSRDLVGMRVILKVKWWELLLMSSIMVAMISYTSCLLLPLRILGHLNQASLSGSHLLKQLFQMLIWIEERCRLPLPKDFFS*

Click here to download the sequence:
Link to NCBI Protein BLAST