Transcript Information: S_Transcript_72979.p1


Annotated TAIR IDAT2G31970.1
Annotated Gene NameDNA repair-recombination protein (RAD50)
Annotated Gene Symbol(s)RAD50, ATRAD50
Annotation TypeOrtholog
Chromosome Positionchr2:13600657-13608815 | Forward length=1316
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.8601141672
Replicate 24.908426226539
Replicate 35.0412946014398
Condition 2: 8 Hour
Replicate 18.8410501998137
Replicate 29.6486029061235
Replicate 310.180461764262
Condition 3: 24 Hour
Replicate 14.8101869493336
Replicate 24.887260810693
Replicate 35.7453404111882


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_72979.p1 GENE.S_Transcript_72979~~S_Transcript_72979.p1 ORF type:complete len:1317 (+),score=283.62,AAA_23|PF13476.2|3.1e-31,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_15|PF13175.2|2.9e-07,AAA_15|PF13175.2|1.6e+04,AAA_15|PF13175.2|5.2e+03,AAA_15|PF13175.2|2.4,SMC_N|PF02463.15|2e-06,SMC_N|PF02463.15|1.6e+04 S_Transcript_72979:156-4106(+)
ATGAGCACGGTAGACAAGATGCTTATCAAAGGAATCCGGAGCTTCGACCCGGAAAACAAAAACGTCATCACTTTCTTCCGGCCCTTAACCTTAATCGTCGGCGCTAACGGTGCCGGAAAAACTACTATAATTGAGTGCTTGAAGCTTTCCTGTACTGGAGAGTTGCCTCCTAATGCTAGGTCTGGTCAGAGCTTTATTCATGACCCTAAGGTTGCAGGAGAAACGGAGACAAAGGCTCAAATTAAGCTTAGGTTCAAGACCGCAGCAGGGAAAGATGTGGTGTGCATACGTTCGTTTCAGTTAACTCAGAAGGCGTCCAAGATGGAGTACAAAGCTATTGAAAGTGTGCTTCAGACTATTAATCCTAATACTGGAGAGAAAGTCTGCCTTAGTTATAGATGCGCCGATATGGACCGAGAAATCCCTGCACTTATGGGTGTTTCTAAAGCTATCTTGGAGAATGTCATATTTGTGCACCAAGATGAGGCAAACTGGCCATTGCAGGATCCTTCCACACTGAAAAAGAAATTTGATGATATCTTCTCTGCCACACGGTACACCAAGGCTTTGGAGGTTATCAAGAAGCTTCATAAGGAGCAGGCACAAGAAATTAAGACATACAAGTTGAAGTTGGAGCATCTGCAAACATTAAAAGATTCTGCGTATAAGCTTCGAGAAAGTAGTGCTCAAGATCAGGAAAGGGCAGAATCTCTGAAAAATCAAATGCAGGAACTGGAAAGGGATACTCAAGATGTTGATGCCAAGATACATCACTTTGAACTCAAGCAAAAAGAACTACTTAAGTTGCAGGACCAGATAACGGAGAAGAGTGCTACAAGAAGCACTCTGCGTTCGGTGCAGCAAGAAAAACATTTAGCACTTGCGGAAGAAGCTGATGACACTGACGAAGAGCTCATGGAATGGAAAGTACAGTTTGATGAGAAAATTGCTCTACAGGATTCTCAAATTAGCAAATTGGAAAGAGAAAATGCGGACCTGGTGGAAACATGTAAGCTAGTAGGTCATAAAATAAGTGAGTATATAGCGGATATAAGCAAGCTTCAAGCCGAAGCAGAGGCTCATGTTTCACTGAAGAATGAAAGGAGCGCCATAATCCAAAAGCTCTTTGATAAGCATAATATGGGTCCTCTTCCAAATGGTCCATTAAGTGATGAAATGGCTTTGAGTTGTACAAGTAGTTTAAATGCAAGGAAGTTGAATATAGAAAAGGATTTACTGGAAAAGAAGAAATCAAATGAAACTGAAATCAGCACAGCATGGGACTGCTATAAGAGTGCTGATAGTCGCCGGAAGGATCTTGAAGCACAATTACGAGCCAGAGCAGAGATGAAGGACGGTATTTTGAAGCGCATCAGAGAGAAGGAGAGTGATCGTGACTCTTACGAAAGTAAAATTTCAGATATCGACCTCTCTCGTATAGATGAAAGAGAGAGGAGTGTGCGCCTTGATGTGGAAAGGAAGACAAACCAGCTTGCTCAAAGAGATTTTGAATCGAATATACGCCAAAAGCAAAGTGAGATTTACATCGTCAAACAGAAGATTAAATCTTTGAATCGCGAAAAAGATGTCTTGGCCAGTGATTCTGAGGATAGAGTGAAGCTATCTTTGAAAAAACCAGAGTTAGAGAATAACAGAAAGAAGTTAAAGAGAATAATGGACGAAAACAAGGATAAGATAAGGATAGTTCTAAAAGGGAGACTCCCTCCGGAAAAGGATTTGAAAGAGAAAATTAAACAAGCTTTAAGTGCTACAGTTGATGAATTTAATGACCTTAAGTCCAAGTCTTATGAAGCTGAAAAAGAAGTAGATGTGTTACAGATGAAAATCAAGGATGTCAGCAACAATTTAAACAAACAGCAGAAAGATATGGATTCTGCGAAGAGGATCATTGAATCTAAACTTCAATCATTGAATCAGCAGTCCTTTGACATTGATTCCTATTGTGAAGCCTTATATAAGGCGAAAGAGAATGCAAATCACCTCAAAAGTTTATTCATTTCGTCAGATGGTCTCATCAAGATGATAGGCCCTTATGTAGATATTGCTCGACGTGGTCATTACTGTCCTGTCTGTGAACGTCCATTTTCTGCCGAAGAAGAGGATGAGTTTGTCAGCAAGCAAAGAGTCGACACCGCCGATCATGGACAGAAATTGAAAACATTAGCTGCAGAATTCTCAGCTGCTGACTTGGTATTTCAAGAGCTGGACTCACTTCGGATGATGTATGAAACCTATGTTAAAATCAGCAAAGAGGGGATCCCTCAAGCAGAGAAAGAATTAGTTGATCTGAATGAAGAGCTGGAGCAGAAGACACAAGCACTCGATGATATTTTAGGTATTGTTGCACAAGTGAAAGCTGACAAGGATTCAATTGAAGCCTTGGTGCAGCCTGTGGAGACAGCAGACAGGCTTTTTCAAGAGATACAGAACTTGCAAGAGCTAGTTGAGAAGTTGGAGTATAAACTTGACTTTCGAGGTCAGGGTGTTAGATCTATGGAGGAAATTCAGTCAGAGCTTAATACACTGCAGAGCACAACGGATAGTTTGCAACATGATATTGAAACATTAACAGAGGAACGAAGAAATATCGAGACTGATTTGTCTAGCAAACAGATGCTTTGGCATTCTATCCGGGAGGAGAAATTGCAAGCAGTTCATAACTTGGAGCTTTTAAAAAAATTGGAAGAGGAACTTGAGCGTTTAGAGGATGAGAGAACTCAAATAGAGCTGGAGCAGAAGCAACTCGCTGAGACTCTTGGTCCCTTAACCAGGGAAACGGATAAACATTTAAGTGCTTACAAAGCTTTGAAAGAAAGACTTGATCGTGAATTTGAGCAGCTGGCTGAAACAAGAAGAATTTACATACAGGATTTTCACGAACTGCTCAATCTTAACACCAAGATAAAGGGTTATGATGAGTTGAAGAAAGCAGAGCGCTTGAATGACCTCAAAGCGAGGAAGTCTCTGTCCGAATCTCAGCTTCTGAACTCTGAGCAAAGGAAGAAGGAAATCTCTATTGAACTGGAAAAAAGCAATAATAACAAGCAGAATTGTGACAATATCAGGCGTAATATTAAAGACAATATAGAATATAGGAGAACAAGAGCACAAGTAGTTCAACTTACTGAGGAGCTCGAGTCATTAGAACAGAGACGAGTAGAGATTGGTAGTGGAAAGATAATTGAGTCCGAGTTATTGAAGCTAAATCAGGAAAGAGACACGCTGCTGTCAGAGTTGAACAGGTGTCGTGGAACAATGTCTGTGTATGAGAGCAATATATCAAAGAACAAGATCGAACTTAAACAGCCACAATACAAGGACATAGACAAACGCTACTTCGATCAACTAATCCAGCTCAAGACTACAGAAATGGCGAACAAAGACCTTGATAGATACTACAACGCTCTTGACAAAGCACTTATGCGTTTTCACACTATGAAGATGGAGGAAATAAACAAGATTATTCGGGAGCTCTGGCAACAAACTTATCGAGGGCAGGACATAGATTACATATACATACACTCAGATTCTGAAAGTGCTGGAACAAGATCTTACAGCTACAAGTTGCTAATGCAGACCGGTGATACAGAGCTAGAAATGCGCGGAAGGTGCAGTGCTGGACAGAAGGTTCTCGCTTCACTTGTCATCCGGTTGGCTTTAGCCGAAACTTTCTGTCTCAACTGTGGAATATTAGCACTTGATGAACCGACAACCAACTTGGATGGCCCTAATTCTGAGAGCTTGGCTGCTGCTCTTTTAAGAATCATGGAGGACAGAAAGGGCCAGGAAAATTTTCAGCTCATTGTCATTACTCATGATGAACGGTTTGCTCAACTGATTGGTCAACGGCAACATGCAGAGAAATATTACCGAGTCTATAAAGATGAGCATCAGCATAGCATAATCTCAGCTCAAGAGATCTTTGATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_72979.p1 GENE.S_Transcript_72979~~S_Transcript_72979.p1 ORF type:complete len:1317 (+),score=283.62,AAA_23|PF13476.2|3.1e-31,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_23|PF13476.2|1.6e+04,AAA_15|PF13175.2|2.9e-07,AAA_15|PF13175.2|1.6e+04,AAA_15|PF13175.2|5.2e+03,AAA_15|PF13175.2|2.4,SMC_N|PF02463.15|2e-06,SMC_N|PF02463.15|1.6e+04 S_Transcript_72979:156-4106(+)
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGANGAGKTTIIECLKLSCTGELPPNARSGQSFIHDPKVAGETETKAQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTINPNTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKEQAQEIKTYKLKLEHLQTLKDSAYKLRESSAQDQERAESLKNQMQELERDTQDVDAKIHHFELKQKELLKLQDQITEKSATRSTLRSVQQEKHLALAEEADDTDEELMEWKVQFDEKIALQDSQISKLERENADLVETCKLVGHKISEYIADISKLQAEAEAHVSLKNERSAIIQKLFDKHNMGPLPNGPLSDEMALSCTSSLNARKLNIEKDLLEKKKSNETEISTAWDCYKSADSRRKDLEAQLRARAEMKDGILKRIREKESDRDSYESKISDIDLSRIDERERSVRLDVERKTNQLAQRDFESNIRQKQSEIYIVKQKIKSLNREKDVLASDSEDRVKLSLKKPELENNRKKLKRIMDENKDKIRIVLKGRLPPEKDLKEKIKQALSATVDEFNDLKSKSYEAEKEVDVLQMKIKDVSNNLNKQQKDMDSAKRIIESKLQSLNQQSFDIDSYCEALYKAKENANHLKSLFISSDGLIKMIGPYVDIARRGHYCPVCERPFSAEEEDEFVSKQRVDTADHGQKLKTLAAEFSAADLVFQELDSLRMMYETYVKISKEGIPQAEKELVDLNEELEQKTQALDDILGIVAQVKADKDSIEALVQPVETADRLFQEIQNLQELVEKLEYKLDFRGQGVRSMEEIQSELNTLQSTTDSLQHDIETLTEERRNIETDLSSKQMLWHSIREEKLQAVHNLELLKKLEEELERLEDERTQIELEQKQLAETLGPLTRETDKHLSAYKALKERLDREFEQLAETRRIYIQDFHELLNLNTKIKGYDELKKAERLNDLKARKSLSESQLLNSEQRKKEISIELEKSNNNKQNCDNIRRNIKDNIEYRRTRAQVVQLTEELESLEQRRVEIGSGKIIESELLKLNQERDTLLSELNRCRGTMSVYESNISKNKIELKQPQYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIYIHSDSESAGTRSYSYKLLMQTGDTELEMRGRCSAGQKVLASLVIRLALAETFCLNCGILALDEPTTNLDGPNSESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVYKDEHQHSIISAQEIFD*

Click here to download the sequence:
Link to NCBI Protein BLAST