Transcript Information: S_Transcript_7328.p1


Annotated TAIR IDAT3G54280.2
Annotated Gene NameDNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases
Annotated Gene Symbol(s)RGD3
Annotation TypeOrtholog
Chromosome Positionchr3:20092361-20104153 | Forward length=2129
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.086420528573
Replicate 210.04023011918
Replicate 310.918744675041
Condition 2: 8 Hour
Replicate 110.709302373927
Replicate 210.104817501188
Replicate 311.0047333677
Condition 3: 24 Hour
Replicate 113.410360724677
Replicate 211.425466933584
Replicate 310.375459743144


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_7328.p1 GENE.S_Transcript_7328~~S_Transcript_7328.p1 ORF type:complete len:2059 (+),score=496.41,DUF3535|PF12054.4|2.6,DUF3535|PF12054.4|62,DUF3535|PF12054.4|3.6e-101,SNF2_N|PF00176.19|8.6e-68,HEAT|PF02985.18|76,HEAT|PF02985.18|0.018,HEAT|PF02985.18|57,HEAT|PF02985.18|5.9,HEAT|PF02985.18|6.1e+03,HEAT|PF02985.18|0.17,HEAT|PF02985.18|24,HEAT|PF02985.18|2.5e+03,HEAT|PF02985.18|7.3e+03,HEAT|PF02985.18|0.0043,HEAT|PF02985.18|0.03,Helicase_C|PF00271.27|9.6e+03,Helicase_C|PF00271.27|2e-14,HEAT_2|PF13646.2|0.00019,HEAT_2|PF13646.2|2.9e+03,HEAT_2|PF13646.2|0.25,HEAT_2|PF13646.2|5.7e+02,HEAT_2|PF13646.2|5e+03,HEAT_2|PF13646.2|1.7e+02,HEAT_2|PF13646.2|11,HEAT_2|PF13646.2|1.8,HEAT_EZ|PF13513.2|0.49,HEAT_EZ|PF13513.2|5.2e+03,HEAT_EZ|PF13513.2|54,HEAT_EZ|PF13513.2|0.00034,HEAT_EZ|PF13513.2|2.6e+02,HEAT_EZ|PF13513.2|2.2e+03,HEAT_EZ|PF13513.2|8.5e+02,HEAT_EZ|PF13513.2|6.7e+02,HEAT_EZ|PF13513.2|22,HEAT_EZ|PF13513.2|2.1e+03 S_Transcript_7328:240-6416(+)
ATGGCGGAACCGCAGCCACCACAGCCTCCACCTCAGCAGCAATCGTCGTCTCGATTGAATCGCCTCTTAACTCTCCTCGACACCGGGTCGACTCAGCAGACTCGGTTCGCGGCTGCGAGGCAAATCGGGGACATAGCGAAATCGCACCCGCAGGAGCTCAACCCATTGCTACGGAAAGTATCGCAGTACCTGAGGTCGAAGAATTGGGACACTAGGGTTTCGGCAGCCAAGGCGATTGGCGCTATTGCCGAGAACTCCAAGCGCACCGTCTCCCTACACCAGCTCGTGAGCGGCACGTGCAGGAGGGTCGCCGAGGCTGGATTCAGAGGGCGCTCTTTTGAGGAGAGCTTAAAGCCGACGAATGAGGCAAGTATTTCTTCGTTTCGTAGCTTTGATATCAATAAAGTGTTGGAATTTGGTGTCTTGTTGGCCTCTGGGGGCCAGGAATATGATTTGAATGATGACTATAGTGTGAAAAACTCGAAAGAACGGTTAGCTCGACAGAAAAAGAACTTGAGGAGGAGATTAGGGCTTGATATGTGTGAACAGTTTATGGATATGAGTGATATGATTAAAGATGAGGACCTTGTGGTTCTCCACAACAACAACATTAACAACACTCCTGTTGTTGCTGGTGGGAGTTTTAATACTAGTATTAATAGTAATAGTAGGAGGAGAGAGGGGTCATTTCGAGCATTTAGGTCGCAGAGACCAAGTGCTAGGGAGTTGAATTTGTTGAAAAGGAAGGCGAAGGTGAGCAGTAGTAGTGTGGTGAGTAGTACACCGAAAGGGGGTTCGGCGAGTGTTGGTGTTGGGGCTGAGGGGGGTGGTGGGTCGAAGGTGTGTGTGGTGGAGTCGACAACTGATGAGGATGTGGTGGGGGAACATGATGGAGGGGATGGGGGTTGGCCGTTTCAGGGGTTTGTGGAGCAGCTTATTATTGATATGTTTGATCCTGTTTGGGAGATTCGTCATGGGAGTATAATGGCATTGAGGGAGATTTTAACTTATCAGGGGGGATACGCTGGGGTGGTTTTGTCAGACTCGAACTACCAACGTGGAAGGGGAATGCTTGGTAGGAGTTCTAGTTTGAAGCTGGGGTTTCCTGTGAAGAGGGAGAGGGAGAAGGAGAGGGAGATTGACTTGAATATGCAAGTTGGGGATGATGACGGGTGTCTGGAGAGTTCAAAAAGATTGAAGCTTGATGGTGCTGAATTAGGTGCGGTTCAGGTTCCTGTGAAGGCGGAGCAGAATGGAGAAGCTCCCCCTTGTGGCCAGTTGAGTCCTGAGGTTGTTAGTGTTGGTCCTGAGATGATGAAGCTTGAACCTTGTCTTATGGAGGGAAACGTGGTTTGTGAAGGGGGTTCAAAGATGATGGGGGTTGTTGATAATTTGAAAGACAAGGGCTCTGCTGGGAAGGTTGAGGTTTCAGAGAATCTTGCTGGAAGTCTTGAGCTGATGAGCTTGGTTAGATCCACACGAGATTCTTGGCTTAGGAATTGTGAATTTCTTCAAGACTGTGCCATCTGCTTTCTTTGTGTTCTGTCATTGGATCGCTTTGGTGATTATGTATCAGATCAAGTGGTTGCTCCGGTGAGGGAAACATGTGCTCAAGCGTTAGGGGCTGTCCTCAAGTACATGGCTCCTGAGTTAGTCCATGAGACTATGAATATTTTGCTTCAGATGCAAAACAGGCCAGAATGGGAGATCCGTCATGGGAGTCTCTTGGGGATTAAATACTTGGTCGCTGTGCGGCAGGAGATGCTCTCTGATATGCTTGGGTTTGTTCTTCCTGCTTGCAAGGCTGGACTTGAGGATCCTGATGATGATGTTAGAGCAGTTGCAGCTGATGCTCTTATACCCGCTGCTGCTTCTATTGTCGCGATGATGGATCAGACGTTGCATTCTATTGTAATGCTGCTGTGGGATATTTTGCTTGACCTAGATGATCTTAGCCCGTCCACCAGTAGTGTGATGAATCTCTTGGCAGAAATCTACTCCCATGCAGGGATGACTGGAAATGTACTTGATGAATTAACACTGGAGGTGAAGCAGGAACTTGATCTCAATGAAATTTCATTTTGCAAGGATGAGCCTGAATTACCAGTGTTGAAAGAAAATCCTTATACTTTGTCAGCTCTGGCTCCGCGTTTATGGCCGTTTATGAGACATAGTATCACCTCAGTTCGCTATTCAGCTATCAGAACTCTGGAAAGGTTGCTTGAAGCTCGATATAGAAGACACATTTCAGAGCCATCTGAGGATTCATTTTGGCCTTCTGTGATATTAGGTGATACCCTTCGAATTGTTTTCCAGAATTTGCTTCTTGAGTCAAATGATGATATTTTGCTGTGCACTGAGAGGGTATGGAAGCTCTTGCTGCATTGTCCTGTTGTGGATCTGGTAGCAGCTGCAGGATCCCATATTCCTTCGTGGTTAGAGCTGGCAACTACTCCTTACGGTTCTGCGTTAGATATGTCAAAGATGTTTTGGCCAGTTGCAGCTCATCAAAAGAGGAGAGTTACAATAGCTGCAAAAATGAGGGCTGTCAAGCTAGACAATTTTTCTGGTAGAATTTGTAGCGTTGGCACAACAAAAGGAACTGTTCCAGATGACAATGGAGATGCCTCCACCACCTCTGTCAAGGTAGTTGTTGGTGCTGATGCAGAGAAGTCTGTAACTCATACTCGAGTAGTGGCAGCAGCGGCTTTGGGAATACTTGCTTCAAAATGGCCTGCGGAGTCAATCCACCATGTAACCGATCCACTTTGGAATGATGTTAAATCTTTATCAGGCGTTCAGCGTCAGGTGTCTTCCATGGTTCTGATATCCTGGTTCAAGGAACTGAAAAGTAGGGAAGTTTCAGCAGCCCAAGGAGTTAATCCTGCTCTTTTTGAACACTTTAAGAAATGGTTGTTAGACTTGTTATCCTGTACTGATCCTTCTTTGCCTACAAAAGATTCATCTCTTCCTTATGCAGAGCTTTCAAGAACATATTCTAAAATGCGCAGTGAAGCCGCTCACCTGTTCCAATCAATTGAAGCTTCTGGAATGTTTATGGATCTTTTGTCAACTGGGTGTATCAATCTTGAAAACTTAGGCATAGATGATGCCATAAACTTTGCTTCCAAAGTCATATTGCCTAGCTATGATTATTCAGGGGAGAATCCTGCAGAAAGGCATGTTTTTGATGATGTAGAGTCATCAAGGCAACGGCTTCTTACAACGACTGGCTACCTGAAGTGTGTTCAAAGTAATTTGCATATTACAGTGTCTTCATTGATGGCTGCTGCCATTGTATGGATTTCTGATCTTCCTGCGAAGCTTAACCCAATAATTTTGCCCCTCATGGCTTCTATTAAGAGAGAGCAGGAGGAAATACTGCAGCAGAAGGCTGCTGAGGCCCTTGCTGAGCTGATTGGTGATTGCATTGCACGTAAACCTGGCCCAAATGAGAAACTAATAAAAAACCTCTGTAGCTTGACATGCATGGATCCTTCTGAAACACCACAGGCTGCAGTGATAACATCTATAGAAGTCATTGAGGATCAAGATCTCCTTTCATGTAGAAGCATGTCTGGTAATCAGAAAGCCAGGGGTCGTTCACATTCGAGTAGTGAGGATAGGTCAAAAGTTGAAGGCTTCATTAGCAGACGAGGGGCCGAACTTGCTCTCAAGTATTTGTGTATTAAATTTGGCTCTTCCTTGTTTGGCAAGATTCCAAAGCTGTGGGATTGCCTTACAGAAGTTCTTAAGCCCATTGATCTAGAAGGGGAAGCTCTTACTGAAGAGAAAAGGATAACATTAGCAATTGAATCTGCTAAGGACCCGCAGTTGTTGATAAATAACATACAAGTGGTTCGCTCAATTGCCCCTTTGCTGGATGATGCATTGAAGCCAAAACTGCTCACTCTCCTGCCGTGCATTTTCAGATGTGTTCGCCATCCCCATGTTGCGGTTAGATTAGCTGCTTCAAGATGCATTACTACAATGGCAAAGTCCATGATATTGAGTGTTATGGCATCCGTGGTTGAGAATGCAGTGCCTATGTTGGGAGATGGGATGTCAGTTCCTGCAAGACAAGGGGCAGGCATGCTCATCAGTCTGCTTGTACAAGGTTTGGGGGTCGAGCTTGTTCCATATGCTCCCTTGTTAGTTGTTCCTCTTCTCAGGTGCATGAGTGATACTGATGCTTCAGTAAGGCAGAGTGTGACACGGAGTTTTGCTGCACTTGTGCCTCTTCTTCCTTTGGCACGGGGCCTGCCTCTACCCAGTGGAATCAAGGATAATTTATTACGTGACAAAGAAGATGCAAGATTCTTGGAGCAGCTCCTTGATAACTCTAGCATTGATGACTATAAACTTTGTACTGAGGTGAAAGTGACTTTAAGGAGATACCAACAGGAAGGCATTAATTGGTTAGCTTTCCTGAGAAGATTTAAATTGCATGGGATTTTGTGTGATGATATGGGACTTGGTAAAACACTTCAAGCTTCTGCAATTGTTGCATCAGATATTGCAGAACATCGCATGGCAAGTAATGGTGATGAACTTCCACCATCATTAATTGTTTGCCCATCAACCCTTGTTGGCCATTGGGCATATGAGATTGAAAAATACATTGATCCTTCTGTTATGGATACCTTCCAGTATGTGGGCTCTGTTGAGGAGCGGATTTGCCTTAGAAGTCAGTTCAGCAAGCATAATATTATCATAACATCATATGATGTTGTGCGTAAAGATGTTGATTTTCTTGGGCAGCGTCGGTGGAACTACTGTATCTTGGATGAGGGACATGTCATTAAAAATGCAAAGTCTAAGATCACTGCTGCTGTGAAACAGTTGAAGGCCCAGAACCGTCTTATACTGAGTGGGACTCCAATCCAGAATAACATCTTGGATCTGTGGTCCCTTTTTGATTTTCTGATGCCAGGCTTCCTCGGAACTGAGCGACAATTTCAAGCTATGTATGGGAAGCCTTTGCTGGCTGCAAGAGATCCAAAATGCTCTGCCAAGGATGCTGAAGCAGGTGCCTTGGCTATGGAAGCACTGCACAAGCAGGTGATGCCTTTTCTACTCCGCCGAACAAAAGATGAGGTCTTATCTGATCTTCCTGAGAAAATCATCCAGGATAGATATTGTGACCTTAGCGCTGTACAGTTGAGACTTTATGAGCAGTATGCAGGCTCACATGCGAAAAAGGAAATATCAAGTATTGTTAGCCTAGATGTCTCGAAAGACTCTAAGGAGATCAAGGCAGCACCCAAAGCATCTTCCCATATTTTCCAGGCCCTTCAGTACCTGCTTAAACTCTGCAGTCATCCACTCTTGGTGGTAGGTGATAAAAGTGCAGATTCACTGAGATGCATCTTGTCAGATCTCCTACCAGGACCAGACATCAGTTCTGAACTACATAAGCTTCACCACTCCCCTAAGCTGATTGCTCTTCATGAGATCTTGGAGGAATGTGGAATAGGTGTGGATACTTCAAATTCTGATAGCATGATTAATGTTGGTCAGCATAGAGTTTTAATATTTGCCCAGCATAAGGCTTTGTTGGATATCATTGAAAGGGACTTGTTCCGTGCCCATATGAGGAATGTCACGTATTTGCGCCTGGATGGGTCAGTCGACATAGAAAAGCGTTTTGAGATTGTGAAAGCATTCAACTCAGATCCAACTATTGATGTATTGCTGCTCACAACGCATGTGGGTGGGCTTGGTTTGAATTTGACATCAGCTGACACCCTTGTATTTATGGAGCATGACTGGAATCCGATGCGCGATCTCCAGGCAATGGATAGAGCTCACAGGCTTGGTCAAAAGAAAGTAGTGAATGTCCATCGTCTCATCATGAGGGGAACTCTGGAAGAGAAAGTTATGAGCCTTCAGAAGTTCAAAGTATCAGTTGCTAATTCTGTCATCAATGCGGAGAACGCCAGCTTGAAGACAATGAACACAGATCAACTGCTCGACCTTTTCACACCAGCTGAGAACGGAAGAAAGGGTGGCAGCATGTTGAAGAACTCTGCTGGAAATTCAAATGAAAATCAGAAAGCAGGAGGCAGCGGTAAAGGATTAAAAGCTATCCTTAGTGGTCTGGAAGAGCTATGGGATCAGTCACAATACACTGAAGAGTACAATCTTGACCAGTTCTTATCAAAGCTCAATGGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_7328.p1 GENE.S_Transcript_7328~~S_Transcript_7328.p1 ORF type:complete len:2059 (+),score=496.41,DUF3535|PF12054.4|2.6,DUF3535|PF12054.4|62,DUF3535|PF12054.4|3.6e-101,SNF2_N|PF00176.19|8.6e-68,HEAT|PF02985.18|76,HEAT|PF02985.18|0.018,HEAT|PF02985.18|57,HEAT|PF02985.18|5.9,HEAT|PF02985.18|6.1e+03,HEAT|PF02985.18|0.17,HEAT|PF02985.18|24,HEAT|PF02985.18|2.5e+03,HEAT|PF02985.18|7.3e+03,HEAT|PF02985.18|0.0043,HEAT|PF02985.18|0.03,Helicase_C|PF00271.27|9.6e+03,Helicase_C|PF00271.27|2e-14,HEAT_2|PF13646.2|0.00019,HEAT_2|PF13646.2|2.9e+03,HEAT_2|PF13646.2|0.25,HEAT_2|PF13646.2|5.7e+02,HEAT_2|PF13646.2|5e+03,HEAT_2|PF13646.2|1.7e+02,HEAT_2|PF13646.2|11,HEAT_2|PF13646.2|1.8,HEAT_EZ|PF13513.2|0.49,HEAT_EZ|PF13513.2|5.2e+03,HEAT_EZ|PF13513.2|54,HEAT_EZ|PF13513.2|0.00034,HEAT_EZ|PF13513.2|2.6e+02,HEAT_EZ|PF13513.2|2.2e+03,HEAT_EZ|PF13513.2|8.5e+02,HEAT_EZ|PF13513.2|6.7e+02,HEAT_EZ|PF13513.2|22,HEAT_EZ|PF13513.2|2.1e+03 S_Transcript_7328:240-6416(+)
MAEPQPPQPPPQQQSSSRLNRLLTLLDTGSTQQTRFAAARQIGDIAKSHPQELNPLLRKVSQYLRSKNWDTRVSAAKAIGAIAENSKRTVSLHQLVSGTCRRVAEAGFRGRSFEESLKPTNEASISSFRSFDINKVLEFGVLLASGGQEYDLNDDYSVKNSKERLARQKKNLRRRLGLDMCEQFMDMSDMIKDEDLVVLHNNNINNTPVVAGGSFNTSINSNSRRREGSFRAFRSQRPSARELNLLKRKAKVSSSSVVSSTPKGGSASVGVGAEGGGGSKVCVVESTTDEDVVGEHDGGDGGWPFQGFVEQLIIDMFDPVWEIRHGSIMALREILTYQGGYAGVVLSDSNYQRGRGMLGRSSSLKLGFPVKREREKEREIDLNMQVGDDDGCLESSKRLKLDGAELGAVQVPVKAEQNGEAPPCGQLSPEVVSVGPEMMKLEPCLMEGNVVCEGGSKMMGVVDNLKDKGSAGKVEVSENLAGSLELMSLVRSTRDSWLRNCEFLQDCAICFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAVLKYMAPELVHETMNILLQMQNRPEWEIRHGSLLGIKYLVAVRQEMLSDMLGFVLPACKAGLEDPDDDVRAVAADALIPAAASIVAMMDQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSHAGMTGNVLDELTLEVKQELDLNEISFCKDEPELPVLKENPYTLSALAPRLWPFMRHSITSVRYSAIRTLERLLEARYRRHISEPSEDSFWPSVILGDTLRIVFQNLLLESNDDILLCTERVWKLLLHCPVVDLVAAAGSHIPSWLELATTPYGSALDMSKMFWPVAAHQKRRVTIAAKMRAVKLDNFSGRICSVGTTKGTVPDDNGDASTTSVKVVVGADAEKSVTHTRVVAAAALGILASKWPAESIHHVTDPLWNDVKSLSGVQRQVSSMVLISWFKELKSREVSAAQGVNPALFEHFKKWLLDLLSCTDPSLPTKDSSLPYAELSRTYSKMRSEAAHLFQSIEASGMFMDLLSTGCINLENLGIDDAINFASKVILPSYDYSGENPAERHVFDDVESSRQRLLTTTGYLKCVQSNLHITVSSLMAAAIVWISDLPAKLNPIILPLMASIKREQEEILQQKAAEALAELIGDCIARKPGPNEKLIKNLCSLTCMDPSETPQAAVITSIEVIEDQDLLSCRSMSGNQKARGRSHSSSEDRSKVEGFISRRGAELALKYLCIKFGSSLFGKIPKLWDCLTEVLKPIDLEGEALTEEKRITLAIESAKDPQLLINNIQVVRSIAPLLDDALKPKLLTLLPCIFRCVRHPHVAVRLAASRCITTMAKSMILSVMASVVENAVPMLGDGMSVPARQGAGMLISLLVQGLGVELVPYAPLLVVPLLRCMSDTDASVRQSVTRSFAALVPLLPLARGLPLPSGIKDNLLRDKEDARFLEQLLDNSSIDDYKLCTEVKVTLRRYQQEGINWLAFLRRFKLHGILCDDMGLGKTLQASAIVASDIAEHRMASNGDELPPSLIVCPSTLVGHWAYEIEKYIDPSVMDTFQYVGSVEERICLRSQFSKHNIIITSYDVVRKDVDFLGQRRWNYCILDEGHVIKNAKSKITAAVKQLKAQNRLILSGTPIQNNILDLWSLFDFLMPGFLGTERQFQAMYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSAVQLRLYEQYAGSHAKKEISSIVSLDVSKDSKEIKAAPKASSHIFQALQYLLKLCSHPLLVVGDKSADSLRCILSDLLPGPDISSELHKLHHSPKLIALHEILEECGIGVDTSNSDSMINVGQHRVLIFAQHKALLDIIERDLFRAHMRNVTYLRLDGSVDIEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQKFKVSVANSVINAENASLKTMNTDQLLDLFTPAENGRKGGSMLKNSAGNSNENQKAGGSGKGLKAILSGLEELWDQSQYTEEYNLDQFLSKLNG*

Click here to download the sequence:
Link to NCBI Protein BLAST