Transcript Information: S_Transcript_73382.p1


Annotated TAIR IDAT1G63020.1
Annotated Gene Namenuclear RNA polymerase D1A
Annotated Gene Symbol(s)NRPD1A, POL IVA, SDE4, NRPD1, SMD2
Annotation TypeOrtholog
Chromosome Positionchr1:23355329-23361126 | Reverse length=1453
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.3539672789542
Replicate 22.9467424409009
Replicate 32.7664104125401
Condition 2: 8 Hour
Replicate 16.0470627337624
Replicate 26.6042923039193
Replicate 35.2997621100056
Condition 3: 24 Hour
Replicate 13.6657509967093
Replicate 23.2753864675406
Replicate 34.4743215759761


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_73382.p1 GENE.S_Transcript_73382~~S_Transcript_73382.p1 ORF type:complete len:1460 (+),score=324.40,RNA_pol_Rpb1_2|PF00623.16|3.8e-31,RNA_pol_Rpb1_2|PF00623.16|5.2e+03,DUF3223|PF11523.4|4.6e-23,RNA_pol_Rpb1_1|PF04997.8|2.5e-15,RNA_pol_Rpb1_3|PF04983.14|5.8e-15,RNA_pol_Rpb1_4|PF05000.13|1.2e-09,RNA_pol_Rpb1_4|PF05000.13|1e+04,RNA_pol_Rpb1_5|PF04998.13|0.01,RNA_pol_Rpb1_5|PF04998.13|0.011 S_Transcript_73382:511-4890(+)
ATGGAAAATGCTATTGATATTGAGAATCAAGTTCCAGAAGGGGTCCTGACTGGCATCAAATTTAATGTTCTGACGGAAGATGATGCAGAAAAGATATCTGTGCTATCTATTGAAACACCTGCAGGTGTAACTGATCCAAAGCTGGGTTTCCCTAATCCTGCTTCTGAATGTGCCACCTGTGGTGCCAGAAACACTAAGCGCTGTGAAGGTCATTTTGGGGTTATCAATTTTCCATACACCATACTCCATCCCTATTATATATCTGAAGTTGTACACATTTTGAACAAAATTTGCCCGGGATGTAAATCTCTTCGGAGAGAACAGGCTAAGGGTGCCAAAGGAATCACTAAGCTTGATCAGTTCAGGGGTTGTAAATATTGTACAGGAAGGTATCCATCTATCAGATTCAAACTTTCAACAAACAAAAAAGACTTGTTTTGGAAGACGGCAATTATAGTAGAACTTAATGAGAGGTCACAAAACAAGTATGAGCTGGAGAATTATTGGGATTTCATTCCTAAAGATGTCCAAGTTGAAGAAAGTAGCAACCCAAATAAAAGAGTGCTGTCACATGCACAGGTCCATCAGTTGCTAAAAGGTGTTGATCCAAGCTTCATAAAAGAGTTTGTTTCAAGAATAGATGCGCTCTTCCTTAACTGCTTCCCAGTGACACCTAATTGTCACCGTGTCACTGAACTTGTCCATCCATTTTCTAGTGGCCAAAAGTTAATTTTTGATGACCGGACTAGGGCTTTCAGGAAATTGGTTGATTTCAGGGGCACTGCCGATGAGTTGGGTGTTCGTGTCCTGGACTGTCTGAAACTTTCAAAGTTGCGTCTTGAGAAGTCAAGTAATGATTCTGCTTTGATGACCAATATAGATGCAGCACTAAATTCATCAGCATCGAAATGGATGAAAGAAGTAGTTCTCACTAAACGAAGTGACCACATTATCCGCTCTGTTGTCACTGGTGATCCTAACTTGAAGATCTATGAAATTGGCATTCCTTGCTATATTGCAGAAAGACTGCAAATCTCCGATCATCTGAACTACTTGAACTGGAAGAAGTTGACTGCCAGCTGCAACTTGAGGCTTCTTGAGAAAGGGGAGGTCTATGTCCGGAGAAAAGGTGACCTGGTTCGTGTTCGTGAGACAGATGAACTCCAATTTGGAGACCTGATATACAGGCCTTTGGATGATGGTGATATAATGCTAATAAATCGGCCTCCATCAATTCATCAACATTCAATGCTTGCTTTAAATGTGAAGATTGTTCCAATAAATTCTGTTGTCTCTATAAACCCACTGTGTTGTGCTCCCTTGCGTGGAGATTTTGATGGTGATTGCCTTCATGGCTATGTGCCACAATCAATGGAAGCAAGGGTGGAGCTCAGGGAGCTTGTAGGATTGGATAGGCAGCTAAGAAATGGACAGAGTGGAAGAAACCTGCTATCACTTAGTCATGATAGCTTGACTGCTGCTCATTTGCTCATGGCAGAAGGTGAACTTATGTCCCAACCTCAAATACAGCAACTGAAGATGTTGTGTCTTCGGCAGTTGATGTCACCAGCCATAAAAAAAACACATTTCATTAAATCGGATTTGTGGACTGGGAAGCAATTGTTTAGCATGATACTGCCACCTGAATTTAATTACATCTCTCCTTCAAATGGTGTTATCATCAATAAAGGAGAACTTCTCTTATCTCCCGATGGGTCCGCGTGGTTGCGTGGGGATGCAGATGGAAACTTCTTTGAAAGCCTTATCGATCATTGCTATGGGGAGGTCCTTGACTATCTTGATGCTGCTCAGAGAGTTCTCTGTGAGTGGCTGTCATTGAGGGGCTTGAGTGTCTCTCTGCTAGACCTTTATCTATGTTCTGATGCACACTCTCATAGGAATTTGATTGACGAAATTTCTTGCGGTTTGGAAGAAGCAGAGATGACCTGTCATCTGAAACAGTTGATGGTTGAGTCTTCTGTCAGTCATCTCATAGATAGTGATGAAGAAGGCAAAAGCTCTGCGTCACTTCAGGTGGAGAAGCTATGTTATGAAAAGCAGAAATCAGCTGCACTAACTCGAGCTTCTTCCAATGCCTTCAAATATATTTTTCGTGATATTCAGAACTTGACTTATCAATTTGCTCTTAGTGACAATTCATTGTTAGCCATGATAAAATCTGGAAGTAAAGGGAATCTGTTGAAAATTGTTCAGCAGAGCATGTGTCTTGGTTTACAGCATTCACTGGTCCCTTTGTCTTTTAGGCTTCCTCACAAGCTATCATGTGCTGCGTGGAATGAACTGAAAACACAAAGCTCAAGTATCAAGGATGGTATTATTCCTGAATGCACCAAAAGTTTCATCCCATTTGCTGTGGTTGGAAGTTCATTTGTTACAGGCCTGAATCCTCTGGAATGTTTTGTTCATTCTGTGACAAGTCGAGATAGCACTTTCAGTGAGAATGCTGATGTTCCTGGGACCTTGACACGAAAGCTTACATTTTTCATGCGTGACATACAGTTGGCTTATGATGGTACTGTAAGAAATGCATATGGGAACCAAGTTGTTCAGTTTTCTTATGCTGCTGCAAAGGATAAGTCTACATCTCTTGATAGAAGTGATGCTGATGAGAGCATGAAGGCTAATGATGCTATTGGCGGCCAACCTGTTGGTGCTTTAGCAGCTTGTGCCATGTCTGAAGCTGCATACAGTGCATTGGACCAACCAGTCAGCATTTTAGAACCATCACCTCTGTTAAATTTTAAGAAAATCATGGAGAGTGGTTCAAGGAAAAGCAAAGGACAAAGGACTGTTTCATTATTTTTGTCTGAGAAGCTCCGAAGGTTGCACTATGGTTATGAATATGGGGCCTTAGAGGTTAAGAATCATCTTGAGAAAGTTCTATTTTCTGATATAGTCTCAACGGTCATGATCTTTTACTCCTCGCATACCTCCAGTCGGGTGAATACATGTCCTTGGGTTTGCCACTTTCACTTGCGCAAGGAGATTTTGAAAAGAAGGCGGCTCAAAGTCCTCTCTGTTATTGATGCCCTCAACAAGGAGTGTGAGGCAACTGCCTGCCTTACTAATGTTCAGATAATGAGCAAGAATGGCTGTCTAACCAATGAAGGGAAGGAGCATGACGCTACAATATGCATTACTGCCACAATTAATGAGTGTCCAAAGAAACCCTACACTGATTTGGATACAGTTCGAGATGTGATGATACCAAGTCTTTTGGGAGCTGTAGTAAAAGGATCTGTTGCGGTTGAGAAGGTAGATATCTTGTGGCATGATGAACTTGTTGATTCAAGGTCTAGGAAGTACTCAGAAGGTGGTGAATTATATCTGAGTGTCTCCCTTTCCACAAATTGCAAAATCATCAAGATGTGGAATTTATTAGTGGATGAATGTCTTCCGATCATGGGGTTGATTGATTGGACACGCAGCTATCCTGATGATTTGAGCGACATGTACTTAGCATATGGGATTGATGTAGCCTGGAGATCATTTCTCAGGAACTTGAACTCTGCTGTTAATGACGTAGGCAAGAGCATTCTTCCAGAACACTTAATCCTAGTGGCAGATTGTCTATCAGTAACAGGAGAATTTGTTGGGTTAAGTGCAAAAGGAATTGCACGGCAAAAATCTCATGTGTCTGTCTCATCACCTTTCTTGCTGGCGTGCTTTACTAATCCAGGTATTTCCTTCATAAAAGCTGCTAAGCGTGGAGCTGCTGATGAGCTGCAAGGAAGTCTAGATGCTTTGGCATGGGGAAGGATTCCACATCTTGGTACTGGTGCACATTTTGAATTTGTATATTCTTGCAAGGGGCATGAAATAGAAAAGCCTGTGGATCCCTATAGCTTGTTGGGTAACCAAACAAGCCCCAATGAGGTTGACATAAAGGTCAAGGTACCAAATGGTCAGAAGCTTATATCTGAAAAGTGTGGTACTTACCACTTTAGTGGATTGTCACCTCCCAAAGTTTTCAAAAATCTGGGTATACCAAAGATACTCCTGCAGAAGCATCTTTCAGTGGCTGACATTTGGAGGCTCTCTCAGATGTGTAAGAATATACTGTACAAATATCCCATTGATCAGCGGCTGAGTGAATCAGATAAGATTAAGTTGATGACGGCTTTACAATTTCACCCGCGGAAGAAGGAGAAACTTGGGAATGGAGCTGTAGATATCAAGGTTGGCTGTCATTCTGATTATGAAGATAGCCGGTGCTTTATTTTGGAGAGGACTGATGGAACTTTTGAAGACTTTTCATACAAGAAGTGTGTTCTTGGTGCACTACAGGTTATTGCTCCTGGGAGGGCAAAAAGCTATCAAGCCAGATGGTCTAAAAATGGTTCAGTCCAGAAGGCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_73382.p1 GENE.S_Transcript_73382~~S_Transcript_73382.p1 ORF type:complete len:1460 (+),score=324.40,RNA_pol_Rpb1_2|PF00623.16|3.8e-31,RNA_pol_Rpb1_2|PF00623.16|5.2e+03,DUF3223|PF11523.4|4.6e-23,RNA_pol_Rpb1_1|PF04997.8|2.5e-15,RNA_pol_Rpb1_3|PF04983.14|5.8e-15,RNA_pol_Rpb1_4|PF05000.13|1.2e-09,RNA_pol_Rpb1_4|PF05000.13|1e+04,RNA_pol_Rpb1_5|PF04998.13|0.01,RNA_pol_Rpb1_5|PF04998.13|0.011 S_Transcript_73382:511-4890(+)
MENAIDIENQVPEGVLTGIKFNVLTEDDAEKISVLSIETPAGVTDPKLGFPNPASECATCGARNTKRCEGHFGVINFPYTILHPYYISEVVHILNKICPGCKSLRREQAKGAKGITKLDQFRGCKYCTGRYPSIRFKLSTNKKDLFWKTAIIVELNERSQNKYELENYWDFIPKDVQVEESSNPNKRVLSHAQVHQLLKGVDPSFIKEFVSRIDALFLNCFPVTPNCHRVTELVHPFSSGQKLIFDDRTRAFRKLVDFRGTADELGVRVLDCLKLSKLRLEKSSNDSALMTNIDAALNSSASKWMKEVVLTKRSDHIIRSVVTGDPNLKIYEIGIPCYIAERLQISDHLNYLNWKKLTASCNLRLLEKGEVYVRRKGDLVRVRETDELQFGDLIYRPLDDGDIMLINRPPSIHQHSMLALNVKIVPINSVVSINPLCCAPLRGDFDGDCLHGYVPQSMEARVELRELVGLDRQLRNGQSGRNLLSLSHDSLTAAHLLMAEGELMSQPQIQQLKMLCLRQLMSPAIKKTHFIKSDLWTGKQLFSMILPPEFNYISPSNGVIINKGELLLSPDGSAWLRGDADGNFFESLIDHCYGEVLDYLDAAQRVLCEWLSLRGLSVSLLDLYLCSDAHSHRNLIDEISCGLEEAEMTCHLKQLMVESSVSHLIDSDEEGKSSASLQVEKLCYEKQKSAALTRASSNAFKYIFRDIQNLTYQFALSDNSLLAMIKSGSKGNLLKIVQQSMCLGLQHSLVPLSFRLPHKLSCAAWNELKTQSSSIKDGIIPECTKSFIPFAVVGSSFVTGLNPLECFVHSVTSRDSTFSENADVPGTLTRKLTFFMRDIQLAYDGTVRNAYGNQVVQFSYAAAKDKSTSLDRSDADESMKANDAIGGQPVGALAACAMSEAAYSALDQPVSILEPSPLLNFKKIMESGSRKSKGQRTVSLFLSEKLRRLHYGYEYGALEVKNHLEKVLFSDIVSTVMIFYSSHTSSRVNTCPWVCHFHLRKEILKRRRLKVLSVIDALNKECEATACLTNVQIMSKNGCLTNEGKEHDATICITATINECPKKPYTDLDTVRDVMIPSLLGAVVKGSVAVEKVDILWHDELVDSRSRKYSEGGELYLSVSLSTNCKIIKMWNLLVDECLPIMGLIDWTRSYPDDLSDMYLAYGIDVAWRSFLRNLNSAVNDVGKSILPEHLILVADCLSVTGEFVGLSAKGIARQKSHVSVSSPFLLACFTNPGISFIKAAKRGAADELQGSLDALAWGRIPHLGTGAHFEFVYSCKGHEIEKPVDPYSLLGNQTSPNEVDIKVKVPNGQKLISEKCGTYHFSGLSPPKVFKNLGIPKILLQKHLSVADIWRLSQMCKNILYKYPIDQRLSESDKIKLMTALQFHPRKKEKLGNGAVDIKVGCHSDYEDSRCFILERTDGTFEDFSYKKCVLGALQVIAPGRAKSYQARWSKNGSVQKA*

Click here to download the sequence:
Link to NCBI Protein BLAST