Transcript Information: S_Transcript_7344.p1


Annotated TAIR IDAT5G41790.1
Annotated Gene NameCOP1-interactive protein 1
Annotated Gene Symbol(s)CIP1
Annotation TypeOrtholog
Chromosome Positionchr5:16727530-16732391 | Forward length=1586
E-Value4.7E-112
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.104912751305
Replicate 219.936738927427
Replicate 323.254613589049
Condition 2: 8 Hour
Replicate 113.299288870503
Replicate 213.036686343695
Replicate 312.014386831899
Condition 3: 24 Hour
Replicate 125.975552368816
Replicate 219.078808654271
Replicate 322.447619520553


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_7344.p1 GENE.S_Transcript_7344~~S_Transcript_7344.p1 ORF type:complete len:1100 (+),score=354.93,CENP-F_leu_zip|PF10473.5|1.7e+02,CENP-F_leu_zip|PF10473.5|33,CENP-F_leu_zip|PF10473.5|0.08,CENP-F_leu_zip|PF10473.5|0.027,CENP-F_leu_zip|PF10473.5|2.9,CENP-F_leu_zip|PF10473.5|20,CENP-F_leu_zip|PF10473.5|5.2e-06,CENP-F_leu_zip|PF10473.5|0.3,CENP-F_leu_zip|PF10473.5|5.7e+02,CENP-F_leu_zip|PF10473.5|7,CENP-F_leu_zip|PF10473.5|8.5e+02,CENP-F_leu_zip|PF10473.5|4.5,KIP1|PF07765.8|9.8e-10,KIP1|PF07765.8|2.8e+03,KIP1|PF07765.8|2.2e+03,KIP1|PF07765.8|2.1e+03,KIP1|PF07765.8|2e+03,KIP1|PF07765.8|1.4e+03,KIP1|PF07765.8|2.2e+03,KIP1|PF07765.8|1.8e+03,KIP1|PF07765.8|97,KIP1|PF07765.8|3.4e+02,KIP1|PF07765.8|7.4e+03,KIP1|PF07765.8|4.5e+03,AAA_13|PF13166.2|0.048,AAA_13|PF13166.2|1.6e+02,AAA_13|PF13166.2|0.00099,AAA_13|PF13166.2|1.1,AAA_13|PF13166.2|0.046,ATG16|PF08614.7|1.6e+03,ATG16|PF08614.7|0.15,ATG16|PF08614.7|0.0019,ATG16|PF08614.7|82,ATG16|PF08614.7|17,ATG16|PF08614.7|0.095,ATG16|PF08614.7|5.9,ATG16|PF08614.7|12,ATG16|PF08614.7|2.7e+02,ATG16|PF08614.7|5.6e+03,ATG16|PF08614.7|2.9,Reo_sigmaC|PF04582.8|1.9,Reo_sigmaC|PF04582.8|66,Reo_sigmaC|PF04582.8|0.29,Reo_sigmaC|PF04582.8|36,Reo_sigmaC|PF04582.8|3.5,Reo_sigmaC|PF04582.8|0.06,Reo_sigmaC|PF04582.8|11,Reo_sigmaC|PF04582.8|0.0074 S_Transcript_7344:191-3490(+)
ATGGGAAAGAAAGATCATCATGTGAGGAAACTAATGTCCTTTTTTGAAAAGCATGCTGATCCTGAGAAACATGAGAAGCTGAAAGAAAGCAGAAAAGATTTAGAGGAGAAGAAGAAAAAGATATTGAATCTTATGGAAAGCCATGATGAAAATGATGGAAGTCAAATTCATGAATCCAAAAAAGGGCACATCACGGAGCTCATTGAGGAATTCCATAAACACTATGAATCGCTTTTTTCTCACTATGATCATCTCACCGGGGTACTCAAGGACAAAGTTCACAAACAGCATCTAAAGAACGAGACTTTCTCTTCTGATTCAGACTCAGGCTCGGACTCCGAGTCTGAACGTTCCACCAATGGGAAAGAATCCAAAAATGGAAAAGTCGAAAATCATATTCCTGCAGCGATTGATGGGCTCAAGAAAGAGCTTGAAGCAGCAATCACAGAGGTCACAGACCTCAAGAACAATTTGACAGCCGTAAGCAACGAGAAAGCTGCTCTTGAATCAGACTATACGACAATGTCAAGCAAGCTAGAGAGTTCTGAAAAAATTGTCGAAGAATTGAAGGCAGAAGCTGAAAGATTAAATCAAGAGAAATCAGAGGTGGTGGGAGAGAACGAAGAACTGAGAATGAGAGTAGAGAGTGCAGCTAAGACAGAAGTTGAATTGAATCAACAAATTGAAGAACTGAAAAAGGAGAGAGATGATATAGTCGTTGCAAAAGAAGATGCGATGAAAAGGGCCGAAGTTGGAACTCAAAGTGTTGAAAACCTTAAAACCCAGGTTGGGCATTTGCAGAGCGAGAAACAGAGCCTCGAGCTTGAAGTGGGAACCGTGAAGCAAAAAGTTTGTGCTCTAGGAGAAGAATTGATCTCGGCAAAAGAGGAATCAGAGAACTTGAGTAAGTCTATGGAAGCTGCTAAAGAGGAAAATATTAGTCTCTCTGAGAAAATTGCAGAGGTAACTGATGAACTTAAGCGTGCACAGAACACCATAGAAGAGCTGACAACAGAATCTGGCAGTTCCAAAGAAAGATTGGTTCAGAGGGAAAAAGACTTCTCATCCCTGCAGGAGATGCATGAAGCACATGTAACTGGTGCTTCAGTGCAAATAAAAGCATTAGAAGAACAGACAAGCAGCTTGAAGCTTGAGCTAGACATGCTAATGGAACAGAAAAGAGAGATGCAAGAGCAGTTTGATAGTAAAGTTGAGGAAGCCAGACAGTTAGGTGAACATGTGTCAGAACTAAGGGCACAGATTTCACAGCTCGAGACAACTTCAAAAGAGAAAGAAGGGGAGATATCTTTGCTCCTAAAGGAGCTGCAGGAGAATCAAAACGAGTTGAATTCCACAATTGAAGGCTTGAGAATACAGGTCAATGATTTAACACAAGAGGCAGAAACAGTGCGTGCTGAGAGAAGTAAAGTAGAGGAACAAATGGCTAGCAGACATGTTGAAGTATCAGCCCAGGTCAAGGAATTGCAGGACCGGATCAGTGCATTGGAGCATGAATTGGAGACCTTGCAGGTACAGGACAGAGAGATGAAGTTGGAACTTGAGAGAAAAACTGACGATGTTGCAGAGTACCTAGTTCAGATAGAAGGTATGCATGAGAAAATAACTAGCAGTGATGCTGAAATGAAGAGTCTTTTTGAGGAAAAGGAAGACCTAGCAGCCAAGTTAAAGGACAAAGAACTAGAGTTAGAGACACTTAACAGCCACAAGATGGGGCTGGAAGAGCAAAACAAGACTAGGAGCAACGAGGCCACTCAATTAAGAGAGGAAATTTCGAGTTTGCAAGGCAGGGTTCTTGAGTTGGAGAAAGAAACACAAGAGAGAGAGGAGAATTCTTCTGCCCTACAGAGAAAGCTTGAGGAGGGGGAGACTGAAGCTTCTTCAAAGATTATAGCGATGATGGCAGAAATAAGCAATTTAAAACAGGAGCTGGAAACAGTTCAGACTGTAAAAGGACAGTTGGAGGCACAAATCGAGAATGAGAAACAAGAATCTTCAAGTAGTTTGAGCCGGCTGGAAAGTGAGAATAGTCAATTGAAAAACAAAATTGAAGATCAGATGATGATGCTTATAGACCTGAAGGATGAATTGAATGAGAGGAGAAAGCAGTGCGAACAACTTGAAGGCCAGGTTCTCGAATTGGAGAAAGCCGTGGAAGATAGAGGATGTGAGTCTTCTACTCTGCAGAGAATGCTTGAGGATGGACAAAGTGAAGCAACTTCACAGATTACAGCCCTGATGACAGAAATTAAGAATTTGAAGGATGAGTTGGAAGCCATTCAGGCTGTAAAAAGCCAGTTGGAAGAACTAGTAGAGAAGGAGAAACAAGAATCTTCTGAGAATTTGACTCAACTGGGAAGCGAGAATGCAGAATTGAAAAGCAAAATTGAAGAGCAGCTAAGGATGCTGAATGAACTGGAGGATGCATTTAATCTGAAAAAAGAGCAGCATGAACAACTTGAAGGCCGGTTACAAGAGAGTGAGGCAGATCTGCAAGCAGCACAAAGCAAGATTGAGAAACTGACAGAATCCTTGAGCATGAATGCCGAGTCAAAAGATGAGATTGTTGAAGAGATGGAAAGGACAATTGAAGACCTGAAGAGAGATTTGGAGGCAGCCGAAGATGAAGCTAATACTGCCATGGAGAAAACTAGGACAATTGAAGTCCAACTTCGGCTATCAAACCAAAAGCTCCGGGTTACAGAACAGTTGCTGACTGAGAAAGAAGAGAGCTACATGGCTGCAGAAAAGAAGTACCAGGAGGAGTGCAAGCTGCTAGAAGACAAGATCGTCAAACTTTCGCACATACTTGCAGCTAACAATGCAGCATATTGTGGAATAATCATGGATATCTCAGAGAATGTAAACAATTCACTTGCTGGAATGGAGTCCATGACCAAAAAGTTTGAGGAGGACCACAACAAGCTGTCAAACAACATTACCAAGATATCAGAAGAGTTTTCGATTGTGAAGCATTGTTTAGCAGGAAAGAATATCGAGAGAGAACAGTTGGAGAAGGAGCTAGGCAATGTAAATGAGAGGTTCAAGAAGCAATATCAAGAGATGGAGGAGTTGCAACGTGCAGTTAGCCAACTGAAGAAGGGGGCAGGAGAGCTGGATATGACATTGAAAGAGAAGGATGAGAGACTTTCAACCCTTGGAGAGGAGAAACGTCAGGCCATAAGGCACCTGTGCTTGTGGAGTGATAATCTCCAGAGTCGCTATGATGAACTAAAGAGCATTGTGTCAAAGGCAGCTTCACATAGGCGGCAGCATACATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_7344.p1 GENE.S_Transcript_7344~~S_Transcript_7344.p1 ORF type:complete len:1100 (+),score=354.93,CENP-F_leu_zip|PF10473.5|1.7e+02,CENP-F_leu_zip|PF10473.5|33,CENP-F_leu_zip|PF10473.5|0.08,CENP-F_leu_zip|PF10473.5|0.027,CENP-F_leu_zip|PF10473.5|2.9,CENP-F_leu_zip|PF10473.5|20,CENP-F_leu_zip|PF10473.5|5.2e-06,CENP-F_leu_zip|PF10473.5|0.3,CENP-F_leu_zip|PF10473.5|5.7e+02,CENP-F_leu_zip|PF10473.5|7,CENP-F_leu_zip|PF10473.5|8.5e+02,CENP-F_leu_zip|PF10473.5|4.5,KIP1|PF07765.8|9.8e-10,KIP1|PF07765.8|2.8e+03,KIP1|PF07765.8|2.2e+03,KIP1|PF07765.8|2.1e+03,KIP1|PF07765.8|2e+03,KIP1|PF07765.8|1.4e+03,KIP1|PF07765.8|2.2e+03,KIP1|PF07765.8|1.8e+03,KIP1|PF07765.8|97,KIP1|PF07765.8|3.4e+02,KIP1|PF07765.8|7.4e+03,KIP1|PF07765.8|4.5e+03,AAA_13|PF13166.2|0.048,AAA_13|PF13166.2|1.6e+02,AAA_13|PF13166.2|0.00099,AAA_13|PF13166.2|1.1,AAA_13|PF13166.2|0.046,ATG16|PF08614.7|1.6e+03,ATG16|PF08614.7|0.15,ATG16|PF08614.7|0.0019,ATG16|PF08614.7|82,ATG16|PF08614.7|17,ATG16|PF08614.7|0.095,ATG16|PF08614.7|5.9,ATG16|PF08614.7|12,ATG16|PF08614.7|2.7e+02,ATG16|PF08614.7|5.6e+03,ATG16|PF08614.7|2.9,Reo_sigmaC|PF04582.8|1.9,Reo_sigmaC|PF04582.8|66,Reo_sigmaC|PF04582.8|0.29,Reo_sigmaC|PF04582.8|36,Reo_sigmaC|PF04582.8|3.5,Reo_sigmaC|PF04582.8|0.06,Reo_sigmaC|PF04582.8|11,Reo_sigmaC|PF04582.8|0.0074 S_Transcript_7344:191-3490(+)
MGKKDHHVRKLMSFFEKHADPEKHEKLKESRKDLEEKKKKILNLMESHDENDGSQIHESKKGHITELIEEFHKHYESLFSHYDHLTGVLKDKVHKQHLKNETFSSDSDSGSDSESERSTNGKESKNGKVENHIPAAIDGLKKELEAAITEVTDLKNNLTAVSNEKAALESDYTTMSSKLESSEKIVEELKAEAERLNQEKSEVVGENEELRMRVESAAKTEVELNQQIEELKKERDDIVVAKEDAMKRAEVGTQSVENLKTQVGHLQSEKQSLELEVGTVKQKVCALGEELISAKEESENLSKSMEAAKEENISLSEKIAEVTDELKRAQNTIEELTTESGSSKERLVQREKDFSSLQEMHEAHVTGASVQIKALEEQTSSLKLELDMLMEQKREMQEQFDSKVEEARQLGEHVSELRAQISQLETTSKEKEGEISLLLKELQENQNELNSTIEGLRIQVNDLTQEAETVRAERSKVEEQMASRHVEVSAQVKELQDRISALEHELETLQVQDREMKLELERKTDDVAEYLVQIEGMHEKITSSDAEMKSLFEEKEDLAAKLKDKELELETLNSHKMGLEEQNKTRSNEATQLREEISSLQGRVLELEKETQEREENSSALQRKLEEGETEASSKIIAMMAEISNLKQELETVQTVKGQLEAQIENEKQESSSSLSRLESENSQLKNKIEDQMMMLIDLKDELNERRKQCEQLEGQVLELEKAVEDRGCESSTLQRMLEDGQSEATSQITALMTEIKNLKDELEAIQAVKSQLEELVEKEKQESSENLTQLGSENAELKSKIEEQLRMLNELEDAFNLKKEQHEQLEGRLQESEADLQAAQSKIEKLTESLSMNAESKDEIVEEMERTIEDLKRDLEAAEDEANTAMEKTRTIEVQLRLSNQKLRVTEQLLTEKEESYMAAEKKYQEECKLLEDKIVKLSHILAANNAAYCGIIMDISENVNNSLAGMESMTKKFEEDHNKLSNNITKISEEFSIVKHCLAGKNIEREQLEKELGNVNERFKKQYQEMEELQRAVSQLKKGAGELDMTLKEKDERLSTLGEEKRQAIRHLCLWSDNLQSRYDELKSIVSKAASHRRQHT*

Click here to download the sequence:
Link to NCBI Protein BLAST