Transcript Information: S_Transcript_73459.p1


Annotated TAIR IDAT1G21700.1
Annotated Gene NameSWITCH/sucrose nonfermenting 3C
Annotated Gene Symbol(s)ATSWI3C, CHB4, SWI3C
Annotation TypeOrtholog
Chromosome Positionchr1:7620156-7623978 | Reverse length=807
E-Value4.5E-255
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.8651642509721
Replicate 29.6049213159871
Replicate 38.9033898334623
Condition 2: 8 Hour
Replicate 111.735092660147
Replicate 212.150228140541
Replicate 311.392953030249
Condition 3: 24 Hour
Replicate 19.4472843831449
Replicate 29.5735066141467
Replicate 39.3857895128234


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_73459.p1 GENE.S_Transcript_73459~~S_Transcript_73459.p1 ORF type:5prime_partial len:696 (+),score=158.66,SWIRM-assoc_1|PF16495.1|3.8e-26,SWIRM|PF04433.13|3.3e-22,Myb_DNA-binding|PF00249.27|5.4e-12,Myb_DNA-bind_6|PF13921.2|2.3e-06 S_Transcript_73459:1-2088(+)
GCCGTCAACCGGCCCCACTCCTCCGTCCTCGCAATTGTCGCTGCCGAGAAGGGTCAGGGGCAGAGTGGTAATTGTAGTGGTAGTGGTGGTGGTGGTGTGGTTTTGGAGAATTTATCGTACGGACAGCTACAGGCATTGTCGGCTGTGCCCTCGGATAATCCGGCATTAGGGTCGGGGTCCGGGGATCAGGAGGGGCCGGTTGTGATTACTCCCCCTCCGATTATGGAAGGGAAGGGTGTTGTTAAGAGGTTTTGGGATCGGGTCCATGTTTTTCCTCTTCATTCAGATTGGTTTCAACCGACCACAGTGCACAGACTGGAGAGACAAGTGGTGCCACATTTCTTTTCTGGGAAGTCAGCTGAACACACACCGGAAAAATACATGGATTGTAGGAATATAATTGTTGCCAAATACATGGAAAGCCCAGAGAAAAGGTTGTCGCTTGGGGATTGCCAAGAATTGGCTTTTGGGGTTGACAAAGAAGATCTCAGTCGAATTTTCCGCTTTCTTGATAACTGGGGTATCATTAACTACTGTGCCCCTCGCCCCCATCATGATTCTTGGAGTATTGAGTCATACTTGAGAGAGGAGCCAAATGGTGAAGTTCATGTGCCATCGGCAACTTTGAAGTCTATTGATAGTCTGATCAAGTTTGATAAGCCAAAATGCAGGCTCAAGCCTGGTGATGTGTACTTGTCATCATTACCATCAAAGGGCAATGATCTTTTGGACTTGGACAGTAGAATACGAGAGAAATTATCCGAGAATCATTGCAATTATTGTTCTCAGCCCCTGTTAGTCGCATACTACCAGTCTGTTAAAGAGGTTGATACAATGCTGTGTTCAGATTGCTATTATGAGGGGAAATTCGTTATTGGCCATTCAAGCATAGACTTCACTAAAGTAGATCCTACAAAAGAGTATCCTGATCAAGATGGAGAAAGTTGGACTGATCAGGAAACGCTTCTGCTCCTCGAGGCAGTTGAAATTTATAATGATAGTTGGAACGAAATAGCAGATCATGTTGGAACTAAGTCAAAGGCACAATGCATTCTTCACTTTCTTCGTTTGCCCATGGAAGATGGCTTATTGGAAAACGTAGAAGTTCCCTCCACCTCCTGTGCATCTAATGGGTCACTCAAGGATGATCATTGCAGATCATATTCAAATACAAATGGTGTCCCTTCAGGACCCCATGTTCAGGATTCTGATTCTAATTCAGATAGTAGGTTTCCATTTGCGAATTCTGGGAATCCTGTCATGCATCTGGTTGCGTTTTTGGCTTCATCTGTTGGACCCAGAGTTGCTGCAGCATGTGCCCATGCATCTTTGGCAGCCTTATCTGAGGAGGATAGATCAGTGCATTGCAATAGGATGGATTCTGATGATGGTGCTTTGGAAACAAGAAATTCTAGTCAGCAGAAAGATGAGAACTCGGCTGCACAAGGTTCTCGGGGTCCAATCAATGCAAATGCAGAAGCTTCTCCACTACCTGTGGAGAAAGTTAAATTGGCTGCAAAAGCTGGTCTTGTGGCTGCAGCAATGAAGGCAAAACTGTTTGCAGACCATGAAGAGAGAGAAATTCAGAGGCTGTCTGCTAGTATCATAAATCATCAGCTGAAGAGATTGGAGTTGAAGCTGAAACAATTTGCAGAAGTCGAGACATTGTTGATGAAGGAATGTGAACAAGTGGAAAAAACAAGACAGAGACTTGCTGGGGAGAGGGCACGTGCTATAGCAGGTAGATTTGGGCCCAGTGGAGTTGCATCACAAATGAACTTGCCTGGTGTTGCTCCGCAAGTTATGAATAATAATATCAGCAGCAGCAGACCACCAGTTATGTCGGCTTCACCTTCGCAGCCTAGTGTTTCTGGATATTCCAATAACCCGATGAGCCATGCACAGATGCCATTCATTGCTCGTCAGCAAATGTTCTCTTTTGGACCTCGTCTACCCCTTTCAGCTATACAGCCTTCTTCCTCAGGGCCTACTTCAGGCGTCATGTTTGGGGCTCAAGGGAGTGGACAGTCTTCTCTTAGTCATCCCATGTTGAGGCCTGTACCAGGAACAAGCTCTGGCATGGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_73459.p1 GENE.S_Transcript_73459~~S_Transcript_73459.p1 ORF type:5prime_partial len:696 (+),score=158.66,SWIRM-assoc_1|PF16495.1|3.8e-26,SWIRM|PF04433.13|3.3e-22,Myb_DNA-binding|PF00249.27|5.4e-12,Myb_DNA-bind_6|PF13921.2|2.3e-06 S_Transcript_73459:1-2088(+)
AVNRPHSSVLAIVAAEKGQGQSGNCSGSGGGGVVLENLSYGQLQALSAVPSDNPALGSGSGDQEGPVVITPPPIMEGKGVVKRFWDRVHVFPLHSDWFQPTTVHRLERQVVPHFFSGKSAEHTPEKYMDCRNIIVAKYMESPEKRLSLGDCQELAFGVDKEDLSRIFRFLDNWGIINYCAPRPHHDSWSIESYLREEPNGEVHVPSATLKSIDSLIKFDKPKCRLKPGDVYLSSLPSKGNDLLDLDSRIREKLSENHCNYCSQPLLVAYYQSVKEVDTMLCSDCYYEGKFVIGHSSIDFTKVDPTKEYPDQDGESWTDQETLLLLEAVEIYNDSWNEIADHVGTKSKAQCILHFLRLPMEDGLLENVEVPSTSCASNGSLKDDHCRSYSNTNGVPSGPHVQDSDSNSDSRFPFANSGNPVMHLVAFLASSVGPRVAAACAHASLAALSEEDRSVHCNRMDSDDGALETRNSSQQKDENSAAQGSRGPINANAEASPLPVEKVKLAAKAGLVAAAMKAKLFADHEEREIQRLSASIINHQLKRLELKLKQFAEVETLLMKECEQVEKTRQRLAGERARAIAGRFGPSGVASQMNLPGVAPQVMNNNISSSRPPVMSASPSQPSVSGYSNNPMSHAQMPFIARQQMFSFGPRLPLSAIQPSSSGPTSGVMFGAQGSGQSSLSHPMLRPVPGTSSGMG*

Click here to download the sequence:
Link to NCBI Protein BLAST