Transcript Information: S_Transcript_73568.p1


Annotated TAIR IDAT2G38020.1
Annotated Gene Namevacuoleless1 (VCL1)
Annotated Gene Symbol(s)VCL1, MAN, EMB258
Annotation TypeOrtholog
Chromosome Positionchr2:15910098-15914190 | Reverse length=858
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.092936824304
Replicate 215.204026373559
Replicate 314.562349531732
Condition 2: 8 Hour
Replicate 121.930365928967
Replicate 220.732304176768
Replicate 320.635554596312
Condition 3: 24 Hour
Replicate 115.957609925753
Replicate 214.894892714479
Replicate 314.817205755724


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_73568.p1 GENE.S_Transcript_73568~~S_Transcript_73568.p1 ORF type:complete len:846 (+),score=160.67,Vps16_N|PF04841.9|8.8e-83,Vps16_C|PF04840.8|8.9e-69 S_Transcript_73568:347-2884(+)
ATGGTGGCACCACCAATATCAGTAGCAGCAGAATGGCAGCTCCTCTACAACCGCTACTACCGAAAACCCGAACTCTACTCCATGAAATGGAAGCACATCGATCTTGCCCGCAACAAGCTGGCTTGCGCCCCATTCGGCGGCCCAATCGCCGTCATTCGCGACGATTCAAAGATCGTACAGCTCTACGCTGAATCCGCCCTTCGTAAGCTCCGAATCTTCAACTCCTCAGGCACTCAAATTTCTGAAACTGTCTGGCGTAATCCTGGCGGTCGATTGATCGGTATGTCCTGGACTGAGGACCAAACCCTAATTTGCATTGTTCAGGATGGGACTATTTATAGGTATAATATTCATGCTGAGTTGATTGATGGTGACTCTAGTGTTACGTTAGGGAAGGAGTGTTTTGAGCACAGTGTTGTGGATTGTGTGTTTTGGGGGAATGGTGTTGTTTGTATGAATGAAGGGTTTCAGTTCTTTTGTGTTCCTGATTTTAAGAATTTAGGGAAGAATAGTGTGGTCAAGTTGGCTGATGTTGGGATTGAGGATCAGCCCTTGTGTATGACCGTGATCGAGCCGAAGTATACCATGTCCGGAAATGTGGAGCTCTTGGTTGCTGTTGAGGACCATGTGCTGTTGGTGGATGAGGATGGGGTTCAGCAGGTCGGGGCCGGAGTCGGGCCACTTCAGAAGATGGTTGTTTCCAAGGATGGGAAGTTTTTGGCTTCGTTTACTCATGATGGGAGGCTCTTGGTTATTACTTCTGATTTCACCAACATCATTTTCGAGTATAGTTGCGAGTCTGCTCTTCCTCCAGAACAACTGGCTTGGTGTGGACTTGACAGTGTACTACTGTATTGGGATGATGTGCTTATGATGGTGGGTCCCTATGGAGATCCAGTGCACTACTTCTATGATGAACCAATAGTTTTGATATCTGAGTCCGATGGTGTTAGGATCCTTTCCAACACAAGCATGGAGTTTCTGCAGAGAGTTCCTGATTCCACAGTGTCTATCTTTAAAATAGGAAGCGCAACACCTGCTGCTTTGCTCTACGATGCTTTGGATCATTTTGATCGACGAAGTGCCAAGGCTGATGAGAATTTAAGAATGATTCGGTCCTCGTTGCCAGAGGCAATTGAAGCATGTGTTGATGCTGCAGGTTATGAATTTGATATTTTGCGCCAAAGAACACTACTGAGAGCTGCAAGCTATGGTCAAGCATTTTGCAGCAATGTTCCTCGTGATCGTTTCCAAGAGATGTGCAAAACCTTGCGTGTCTTAAATGCCGTGCGGAGCCCTGAAATTGGTATTCCTCTTAGTATACTGCAATATAAGGAGCTAACAGCACCGGTTCTAATTTCTCGTTTGATCAATGCGCACCATCACCTTCTGGCACTGAGGTTGTCTGAGTATCTTGGCTTGAACCAGGAGCTGGTCATAATGCATTGGGCATGTACGAAGATAACGGCTTCTCTAGCAATGCCTGATGCTGCTCTCCTCAGTATTCTACTTGACAAGTTGAGACTATGCAAAGGCATAGACTACGCGAGAGTTGCTGAGCACGCTGATAAGAGTGGCCGTAGGAAGCTGGCTGCTACCCTCGTTGAACATGAGCCCTGCTCTTCTAAACAGATTCCACTTCTTTTGAGCATAGGAGAAGAAGAGACGGCTTTGTCAAAGGCAACTGAAAGTGGTGATACTGATCTGGTGTACTTTGTCCTGTTCCATGTATGGCAGAAGAGACAATCTTTGGAATTCTTTGGGATGATTCAAGCTAAACCTTTGGCAAGGGATTTGTTTATAGCTTATTCACGGTGTTATAACCATGAATTTCTAAAGGACTTCTTTTTGTCAGCTGGACAACTACAGGAAGTTGCTTTTCTTTTGTGGAAGGAGTCCTGGGACTATAGTAAGAATCCGATGGCTAGCAAGGGTACTCCGCTTCATGGACCTCGCATAAAACTTATTGAGAAGGCCCGAGATCTCTTTGCTGAAACAAAGGAACATAATTTTGAGTCAAAAGCTGCTGAAGAGCACGCAAAATTGTTAAGAATCCAACATGAATTGGAAGTGTCCACGAAGCAGGCTATCTTTGTAGATTCAAGCATCAGTGACACAATCCGGACATGCATTGTACTAGGAAATCATCGAGCTGCTATGAAGGTGAAGTCAGAGTTCAAGGTTTCTGAGAAAAGGTGGTATTGGCTTAAAGTTTTTGCATTGGCTACAATAAGAGATTGGGATGCCCTGGAGAAGTTTTCAAAGGAGAAGAGACCGCCAATAGGTTATAAACCCTTTGTGGAGGCTTGCATTGATGCTGATGACAAAGGTGAAGCTCTGAAATATATACCAAAACTTGCTGATCCTCGTGAAAGAGCTGAGGCCTATGCTAGGATTGGAATGGCAAAGGAAGCTGCAGATGCAGCGAGCCAGGCAAAAGATAGTGAGCTCCTTGGTCGGTTGAAGTTGAGTTTTTCCCAAAACGCTGCAGCTACTTCGATTTTTGACACCATTCGTGAGAGACTGGGCGTTTCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_73568.p1 GENE.S_Transcript_73568~~S_Transcript_73568.p1 ORF type:complete len:846 (+),score=160.67,Vps16_N|PF04841.9|8.8e-83,Vps16_C|PF04840.8|8.9e-69 S_Transcript_73568:347-2884(+)
MVAPPISVAAEWQLLYNRYYRKPELYSMKWKHIDLARNKLACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSSGTQISETVWRNPGGRLIGMSWTEDQTLICIVQDGTIYRYNIHAELIDGDSSVTLGKECFEHSVVDCVFWGNGVVCMNEGFQFFCVPDFKNLGKNSVVKLADVGIEDQPLCMTVIEPKYTMSGNVELLVAVEDHVLLVDEDGVQQVGAGVGPLQKMVVSKDGKFLASFTHDGRLLVITSDFTNIIFEYSCESALPPEQLAWCGLDSVLLYWDDVLMMVGPYGDPVHYFYDEPIVLISESDGVRILSNTSMEFLQRVPDSTVSIFKIGSATPAALLYDALDHFDRRSAKADENLRMIRSSLPEAIEACVDAAGYEFDILRQRTLLRAASYGQAFCSNVPRDRFQEMCKTLRVLNAVRSPEIGIPLSILQYKELTAPVLISRLINAHHHLLALRLSEYLGLNQELVIMHWACTKITASLAMPDAALLSILLDKLRLCKGIDYARVAEHADKSGRRKLAATLVEHEPCSSKQIPLLLSIGEEETALSKATESGDTDLVYFVLFHVWQKRQSLEFFGMIQAKPLARDLFIAYSRCYNHEFLKDFFLSAGQLQEVAFLLWKESWDYSKNPMASKGTPLHGPRIKLIEKARDLFAETKEHNFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKSEFKVSEKRWYWLKVFALATIRDWDALEKFSKEKRPPIGYKPFVEACIDADDKGEALKYIPKLADPRERAEAYARIGMAKEAADAASQAKDSELLGRLKLSFSQNAAATSIFDTIRERLGVS*

Click here to download the sequence:
Link to NCBI Protein BLAST