Transcript Information: S_Transcript_75242.p1


Annotated TAIR IDAT1G33980.2
Annotated Gene NameSmg-4/UPF3 family protein
Annotated Gene Symbol(s)ATUPF3, UPF3
Annotation TypeOrtholog
Chromosome Positionchr1:12351719-12354401 | Forward length=484
E-Value1E-117
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.215002698201
Replicate 217.66781155801
Replicate 316.973195359808
Condition 2: 8 Hour
Replicate 121.452832888749
Replicate 219.920749685175
Replicate 319.659835540053
Condition 3: 24 Hour
Replicate 122.018946307252
Replicate 217.92337290002
Replicate 316.529985277457


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_75242.p1 GENE.S_Transcript_75242~~S_Transcript_75242.p1 ORF type:complete len:502 (+),score=132.77,Smg4_UPF3|PF03467.11|1.3e-49 S_Transcript_75242:383-1888(+)
ATGAAAGACCCGTTGAATCGAACCAAAGTAGTGATTCGACACTTGCCTCCAAACCTTTCTCAGTCTGCCTTTTTCGAACAAATCGATGTTCGCTTTGATGGCCGTTACAATTGGTCCTCTTTTCGCCCTGGCAAAATCAGTCACAAGAACCAGAGGTATGCGCGAGCTTATGTGAACTTCAACAGCCCTGGGGATGTTTTCGAGTTTGCCGAGTTCTTTAATGGCCATGTTTTTGTTAATGAAAAAGGTGCTCAATTTAAGGCTATAGTGGAGTATTCTCCATCTCAACGTGTTCCGAAACCTAATGCCAAGAAGGATGGTCGCGAAGGGACTCTTTACAAAGATCCTGAGTATGTGGAGTTCGTTGAGTGGATTTCTAAACCTGTTGAGAATCTCCCTAGTGCTGATATACAACTCGAGAGAAGAGAAGCAGAACGAGCAGGCGTTCAGGAAGCTCCTGTTGTGACACCTCTGATGGAGTATGTGCGGAAGAAGAGAGCTGCCAAGAGTGGCAATCAGCATGGAGCGGGCTCTGATGTTAAGGCTGGTGGAAGATCTGGAATGTCTCCAGGAAAGTCTCGATCAAGCAAGCAAGGATCTGAAAAGAAGAAGTATATTATGAAAGCTAGTGGCAAGAGCACTAATGGAAAAGACAAGTCAACTTACGTTATTTGGCCTCAAAGAGAGAATCAGTTGGATGCCTCTGGCAGAAAATCAGTGGAATCTGAAAGTGGAAGCGTGTCTCTTGATACACCAAAGAGAAAGTATCTGCTTGTGAAAGGGAAAGAGCAGGAAATTTCTCAGGCTTCTGATGTCAGTATGCAACCTAAGGGGAGCAATTCTGGGGTTGAAGCTATGCCTACTTCAGGTTCTTTTAAATTAAATCAGAGGTCTGATGCTAGTGGAAGAATTATCAGAAGTATACTGATGAAGGAAACCCGTCAAAATCAATCATCCTCATCAGTCCAGACAGAGCAGAAGCTTCAAGGCATGAATGCAGAGAAGGGAAAGCGGCCACCTCGTCCCTCTAGTATGAGATCAGGTGGACAAACCTCCACCAATGAACAGTCTGTTGGTTCAGATTATGTTGGAAAACGGTATGCAGAAGACAAATCTCCAGGAAATGAATCACTTGGTTTTGGTGCTGGTCTTGAGAAACCAGACAGGCGTACAAGAAGTAGAGAGAGACTTGATCGTGGTGTCTGGACTCCTCGTCGATCCGACTCTTCTCATGCTCATGATGAATACAATACCGCTGATTCATATGAAGGTGAGCGAGGGGAGTCCAAATATGGCAACTCTCAATCTGGCCGCAGTGTCGAAGTTACTGTTCCTTCAGGAGGCCGAAACAGTTCATATATAGAAAATGGTTCTCATAGGCATTTTGGTCGCCGGGGTTCTCCACACAGTGGGAAGGATGATGGCTCTTCAAAAAGGGGAGCCACGGCTGGCCATGGTCCCCATGAGAAACAGGTGTGGGTTCAGAAGTCAGCCGCAGGTTCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_75242.p1 GENE.S_Transcript_75242~~S_Transcript_75242.p1 ORF type:complete len:502 (+),score=132.77,Smg4_UPF3|PF03467.11|1.3e-49 S_Transcript_75242:383-1888(+)
MKDPLNRTKVVIRHLPPNLSQSAFFEQIDVRFDGRYNWSSFRPGKISHKNQRYARAYVNFNSPGDVFEFAEFFNGHVFVNEKGAQFKAIVEYSPSQRVPKPNAKKDGREGTLYKDPEYVEFVEWISKPVENLPSADIQLERREAERAGVQEAPVVTPLMEYVRKKRAAKSGNQHGAGSDVKAGGRSGMSPGKSRSSKQGSEKKKYIMKASGKSTNGKDKSTYVIWPQRENQLDASGRKSVESESGSVSLDTPKRKYLLVKGKEQEISQASDVSMQPKGSNSGVEAMPTSGSFKLNQRSDASGRIIRSILMKETRQNQSSSSVQTEQKLQGMNAEKGKRPPRPSSMRSGGQTSTNEQSVGSDYVGKRYAEDKSPGNESLGFGAGLEKPDRRTRSRERLDRGVWTPRRSDSSHAHDEYNTADSYEGERGESKYGNSQSGRSVEVTVPSGGRNSSYIENGSHRHFGRRGSPHSGKDDGSSKRGATAGHGPHEKQVWVQKSAAGS*

Click here to download the sequence:
Link to NCBI Protein BLAST