Transcript Information: S_Transcript_75540.p1


Annotated TAIR IDAT3G07530.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:2400793-2404280 | Forward length=699
E-Value9.5E-145
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1361719711119
Replicate 24.1508724729885
Replicate 33.205792570769
Condition 2: 8 Hour
Replicate 15.712936874324
Replicate 25.5815246095023
Replicate 35.1872921574495
Condition 3: 24 Hour
Replicate 14.1098758305412
Replicate 23.6614337720479
Replicate 33.3010446665183


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_75540.p1 GENE.S_Transcript_75540~~S_Transcript_75540.p1 ORF type:complete len:489 (+),score=103.17,Beta-Casp|PF10996.4|1.8e-05 S_Transcript_75540:751-2217(+)
ATGGAACAGAATTGGGTGGTTGGTTGCCATTGTACAGTTGATGTGAAGGATTGCATTCAGAAGGTGGAGTCACTTAAATATGCTCAAGAAACTTCTTATGGTGGCTCATTAATCATCAAAGCATTTAGCTCTGGTCTTGATATTGGCACATGTAACTGGGTGATAAGAAGTCCGAAAAGAGATGCTGCTGTCTTATCTAGCTCTGTGTTTGTCTCCCCTCAAGCAATGAACTTTGATCACCATTCTCTTCAAAACCATGATATCGTACTTTATTCAGATTTCTCATCTCTTAATGGTGGGGAAGCTGCTGAAGAAGATAACAATCACTCAACTTCAGTTCATGAAGACGCTCAGGGTGCATCTTTGGAGTCATTGCTCAACGCTGATGAGAGTTTAGAGGAGGAGGAGAAGCTAGCATTTATCATTTTATGTGCTAATAATGCCCTTAAAATGGGCGGTTCAGTTTTGATCCCAATTGGTCGAATGGGAGTGGTTTTGCAATTGTTGGAGCACTTGTCATTTTCTCAGGAATTTTCAACTTTGAAGGTTCCCATATTTTTCATTTCTTCTGTTGCAGAAGAGCTGTTATCTTTCACCAATATCATACCAGAGTGGCTGTGCATGCAACGGCAGAAAAAGTTGTTTGCTGGTGAGCCATTATTTGCACATGTGAATTTCGTGAAAGAGAAGAAGCTCCATCTGCTTTCTTCAATCTGTGCACCTGATCTATTGAACATTTGGCAGGAACCATGCATAGTATTTACTCCTCACTGGAGCCTGCGGCTTGGGCCTGTTGTTCATTTTCTTCAGCGTTGGCGAGGCGATGAAAAGTCATTGCTTGTGCTAGAGAAAGGGCTGGATGCAGATCTTGCTCTTCTACCTTTTAAGCCTTTGGAAATGAAGGTCCTTCAATGTTCGTTCCTCTCTGGAATAAGATCAAGTAAAGTTGCACCATTGTTGGAGAGGTTGCAGCCAAAGTGTGTCCTGTTCCCTGAAGATTTGAGGACTCTGGGCATTCTGAAGGCAACATCATTCTCAACCATTTATTACTCTGAAAATGGCATGTTACGTGTACCCAGTCTGAAACAATGTGCAGACCTTGAGATTTCAACAGAATTAGCAACTCGTTTTCAGTGGATAAATTTGAGGGAGGATGATATAAACATTGCAAGATTGAAGGGTGAGCTGAACGTTGAGCATGGAAAACATTGGTTACTCCCGGGTTCTGAGTCCAAGGAGATCTCAATCGATCTGGGAATGCTTTCGACTGTGTTGAATAGCAACGGTATTAAAACATCTCTACGAAAAGCCACATGTGATGGGTCTAGCACCTTCGTGTTAGATATTGATGAACCCGGCAAGGCTGTGATAGAAGTGCACCCAAAAAGGATAGTGATAAGCACACATGACAAGCACTTGTCCTCCTGCATTTTTGAAGTTGTGGATAGCGTTCTTAGTGCCATGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_75540.p1 GENE.S_Transcript_75540~~S_Transcript_75540.p1 ORF type:complete len:489 (+),score=103.17,Beta-Casp|PF10996.4|1.8e-05 S_Transcript_75540:751-2217(+)
MEQNWVVGCHCTVDVKDCIQKVESLKYAQETSYGGSLIIKAFSSGLDIGTCNWVIRSPKRDAAVLSSSVFVSPQAMNFDHHSLQNHDIVLYSDFSSLNGGEAAEEDNNHSTSVHEDAQGASLESLLNADESLEEEEKLAFIILCANNALKMGGSVLIPIGRMGVVLQLLEHLSFSQEFSTLKVPIFFISSVAEELLSFTNIIPEWLCMQRQKKLFAGEPLFAHVNFVKEKKLHLLSSICAPDLLNIWQEPCIVFTPHWSLRLGPVVHFLQRWRGDEKSLLVLEKGLDADLALLPFKPLEMKVLQCSFLSGIRSSKVAPLLERLQPKCVLFPEDLRTLGILKATSFSTIYYSENGMLRVPSLKQCADLEISTELATRFQWINLREDDINIARLKGELNVEHGKHWLLPGSESKEISIDLGMLSTVLNSNGIKTSLRKATCDGSSTFVLDIDEPGKAVIEVHPKRIVISTHDKHLSSCIFEVVDSVLSAM*

Click here to download the sequence:
Link to NCBI Protein BLAST