Transcript Information: S_Transcript_75541.p2


Annotated TAIR IDAT3G07530.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:2400793-2404280 | Forward length=699
E-Value1E-51
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8850875874919
Replicate 21.4708526371677
Replicate 31.9979630757234
Condition 2: 8 Hour
Replicate 12.8433853756177
Replicate 20.93216035998861
Replicate 32.309216823873
Condition 3: 24 Hour
Replicate 11.2742848702847
Replicate 21.3220556752869
Replicate 31.4712859236318


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_75541.p2 GENE.S_Transcript_75541~~S_Transcript_75541.p2 ORF type:5prime_partial len:240 (+),score=34.85 S_Transcript_75541:1-720(+)
CTTTCATCCTCTCTCTCGCTCAAACCCTTCTTCTCTGCCGTGAACACCGCCCTCCACGCAAAAAAAAAAAAAAAAAAAAGGATCAAAAAAAAATGTTGCGATTTGATTACCATGACTTGTCTAAGCAAGGGTAATGGTTATCATTTTCCCCCATGTTACATACTTGAAATTGGCGGATTTCGATTGTTGCTGGATTGCCCCTTGGATCTTTCAGCTTTGGCTGTTTTCTCCCCTGTTCCTGCTTATTCTGACCGAAACCTTGAGGAGTCGTTTGTTTGTGAATGCATCATCTCTTTGGATGCTGATTCTGCAGCTCATAAGAGGCAGAAAAGTGAAAACTCTATTGATGCTAGTGATTTAATATATGACATCCCTTGGTACAAAACTGTTTGTAATTTACACCTTTGGGATATTTCTTTCATTGACGCTGTCTTGATCTCAAGCCCTATGGGAATGCTGGGATTACCCTTTTTTACTCGTGCTAACGGTTTCTCTGCTAAGATTTATGCAACTGAAGCAACAACAAGAATTGGGCAGCTTATGATGGAGGATCTTGTTTCCATGCATAGTGAGTTCAAACAGTTTTATGGGCCACAGGATTCAGGGTGTGCCCAGTGGATGAAATGGGAAGAGCTTGACAAACTTCTACTTGTAATGCAAGAGATGATTTCAGGCAAAAATGGAACAGAATTGGGTGGTTGGTTGCCATTGTACAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_75541.p2 GENE.S_Transcript_75541~~S_Transcript_75541.p2 ORF type:5prime_partial len:240 (+),score=34.85 S_Transcript_75541:1-720(+)
LSSSLSLKPFFSAVNTALHAKKKKKKRIKKKCCDLITMTCLSKGNGYHFPPCYILEIGGFRLLLDCPLDLSALAVFSPVPAYSDRNLEESFVCECIISLDADSAAHKRQKSENSIDASDLIYDIPWYKTVCNLHLWDISFIDAVLISSPMGMLGLPFFTRANGFSAKIYATEATTRIGQLMMEDLVSMHSEFKQFYGPQDSGCAQWMKWEELDKLLLVMQEMISGKNGTELGGWLPLYS*

Click here to download the sequence:
Link to NCBI Protein BLAST