Transcript Information: S_Transcript_75546.p1


Annotated TAIR IDAT3G07530.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:2400793-2404280 | Forward length=699
E-Value3E-100
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.42354909127608
Replicate 21.6386156700542
Replicate 30.8805550384743
Condition 2: 8 Hour
Replicate 11.8101127059635
Replicate 22.4923544903674
Replicate 32.8835762012044
Condition 3: 24 Hour
Replicate 10.34766392823227
Replicate 21.2624404326347
Replicate 32.0739612110308


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_75546.p1 GENE.S_Transcript_75546~~S_Transcript_75546.p1 ORF type:3prime_partial len:377 (+),score=83.76,Lactamase_B_6|PF16661.1|3.2e+02,Lactamase_B_6|PF16661.1|1.1e-09 S_Transcript_75546:177-1304(+)
ATGAAGCTTACTTGTCTAAGCAAGGGTAATGGTTATCATTTTCCCCCATGTTACATACTTGAAATTGGCGGATTTCGATTGTTGCTGGATTGCCCCCTGGATCTTTCAGCTTTGTCTGTTTTCTCCCCTATTCCTGCTTATTCTGACCGAAACCTTGAGGAGTCGTTTGTTTGTGAATGCATCATCTCTTTGGATGCTGATTCTGCAGCTCATAAGAGGCAGAAAAGTGAAAACTCTATTGATGCTAGTGATTTAATATATGACATCCCTTGGTACAAAACTGTTTGTAATTTACACCTTTGGGATATTTCTTTCATTGACGCTGTCTTGATCTCAAGCCCTATGGGAATGCTGGGATTACCCTTTTTTACTCGTGCTAACGGTTTCTCTGCTAAGATTTATGCAACTGAAGCAACAACAAGAATTGGGCAGCTTATGATGGAGGATCTTGTTTCCATGCATAGTGAGTTCAAACAGTTTTATGGGCCACAGGATTCAGGGTGTGCCCAGTGGATGAAATGGGAAGAGCTTGACAAACTTCTACTTGTAATGCAAGAGATGATTTCAGGCAAAAATGGAACAGAATTGGGTGGTTGGTTACCATTGTACAGTGCAGCTGATGTGAATGATTGCGTTCAGAAGGTGGAGTCACTTAAATATGCTCAAGAAACTTCTTATGGTGGCTCATTAATCATCAAAGCATTTAGCTCTGGTCTTGATATTGGCACATGTAACTGGGTGATAAGAAGTCCGAAAAGAGATGCTGCTGTCTTATCTAGCTCTGTGTTTGTCTCCCCTCAAGCAATGAACTTTGATCACCATTCTCTTCAAAACCATGATATCGTACTTTATTCAGATTTCTCATCTCTTAATGGTGGGGAAGCTGCTGAAGAAGATAACAATCACTCAACTTCAGTTCATGAAGACGCTCAGGGTGCATCTTTGGAGTCATTGCTCAACGCTGATGAGAGTTTAGAGGAGGAGGAGAAGCTAGCATTTATCATTTTATGTGCTAATAATGCCCTTAAAATGGGCGGTTCAGTTTTGATCCCAATTGGTCGAATGGGAGTGGTTTTGCAATTGTTGGAGCACTTGTCATTTTCTCAGGAATTTTCAACTTTGAAGGTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_75546.p1 GENE.S_Transcript_75546~~S_Transcript_75546.p1 ORF type:3prime_partial len:377 (+),score=83.76,Lactamase_B_6|PF16661.1|3.2e+02,Lactamase_B_6|PF16661.1|1.1e-09 S_Transcript_75546:177-1304(+)
MKLTCLSKGNGYHFPPCYILEIGGFRLLLDCPLDLSALSVFSPIPAYSDRNLEESFVCECIISLDADSAAHKRQKSENSIDASDLIYDIPWYKTVCNLHLWDISFIDAVLISSPMGMLGLPFFTRANGFSAKIYATEATTRIGQLMMEDLVSMHSEFKQFYGPQDSGCAQWMKWEELDKLLLVMQEMISGKNGTELGGWLPLYSAADVNDCVQKVESLKYAQETSYGGSLIIKAFSSGLDIGTCNWVIRSPKRDAAVLSSSVFVSPQAMNFDHHSLQNHDIVLYSDFSSLNGGEAAEEDNNHSTSVHEDAQGASLESLLNADESLEEEEKLAFIILCANNALKMGGSVLIPIGRMGVVLQLLEHLSFSQEFSTLKV

Click here to download the sequence:
Link to NCBI Protein BLAST