Transcript Information: S_Transcript_75746.p1


Annotated TAIR IDAT1G15820.1
Annotated Gene Namelight harvesting complex photosystem II subunit 6
Annotated Gene Symbol(s)LHCB6, CP24
Annotation TypeOrtholog
Chromosome Positionchr1:5446685-5447676 | Reverse length=258
E-Value1.3E-60
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11314.5323286166
Replicate 21739.0760811075
Replicate 32226.5058076138
Condition 2: 8 Hour
Replicate 1775.67352808445
Replicate 2706.28871444996
Replicate 3717.08312682391
Condition 3: 24 Hour
Replicate 11998.1914905587
Replicate 21680.9525600147
Replicate 31665.5430308928


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_75746.p1 GENE.S_Transcript_75746~~S_Transcript_75746.p1 ORF type:3prime_partial len:142 (+),score=42.22,Chloroa_b-bind|PF00504.17|2.3e-23 S_Transcript_75746:313-735(+)
ATGGCAGCTACAACATCTGCAAGTGCAATAGTAAATGGGTTGTCTTCACCCTTCTTATCTGGTGGGAAGAAAAGTGTTAAGTCTAACTTGTTTGGTGTGATTAATAATAATAAAGAGGGATCATCAAGTGTTGTTAATTCTACAAAGAAGTTGGCAGTTGTAGCTGCAGCTGTTGAGAAGAAGTCTTGGATTCCTGCTGTTAAAGGTGGTGGCAATCTCATTGATCCTGAGTGGCTGGATGGCTCGTTGGCAGGAGACTATGGATTTGACCCACTAGGGCTGGGCAAGGACCCAGCATTCCTCAAGTGGTACAGAGAGGCTGAGCTGATCCACGGGCGTTGGGCCATGCTGGCTGTGGTGGGGATCTTTGTGGGCCAGGCCTGGAGTGGCATCCCATGGTATGAGGCTGGTGCAGCCCCAGGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_75746.p1 GENE.S_Transcript_75746~~S_Transcript_75746.p1 ORF type:3prime_partial len:142 (+),score=42.22,Chloroa_b-bind|PF00504.17|2.3e-23 S_Transcript_75746:313-735(+)
MAATTSASAIVNGLSSPFLSGGKKSVKSNLFGVINNNKEGSSSVVNSTKKLAVVAAAVEKKSWIPAVKGGGNLIDPEWLDGSLAGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVVGIFVGQAWSGIPWYEAGAAPG

Click here to download the sequence:
Link to NCBI Protein BLAST