Transcript Information: S_Transcript_75800.p1


Annotated TAIR IDAT1G54690.1
Annotated Gene Namegamma histone variant H2AX
Annotated Gene Symbol(s)HTA3, H2AXB, G-H2AX, GAMMA-H2AX
Annotation TypeOrtholog
Chromosome Positionchr1:20414607-20415206 | Reverse length=142
E-Value1.5E-83
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1116.94935542793
Replicate 290.334866132713
Replicate 374.795540783491
Condition 2: 8 Hour
Replicate 1122.38404554221
Replicate 2121.55371094251
Replicate 3115.93452669598
Condition 3: 24 Hour
Replicate 157.160778467055
Replicate 267.361884407477
Replicate 362.914988543873


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_75800.p1 GENE.S_Transcript_75800~~S_Transcript_75800.p1 ORF type:5prime_partial len:180 (+),score=30.05,Histone_H2A_C|PF16211.1|1.1e-16,Histone|PF00125.20|7.4e-15 S_Transcript_75800:1-540(+)
CTAATTTTCTCGCAGCGTAAACTCACTTGCTTCCGTCTCCATCCTCCTACATCTCTCCGATCATTTCTCTCTCTCTTAGGGTTCCGTTCTCCGTTAGGTTTCCGGCGAAGAAAGATGAGCAGCAAGGAAGGCGCATCTACCAAGGGCGGAAGAGGAAAGCCAAAGGCCTCGAAATCGGTGTCTCGCTCTCAAAAAGCCGGTCTTCAGTTTCCGGTCGGCCGTATCGCTCGTTTCTTGAAAGCCGGAAAGTACGCCGAGCGTGTCGGTGCCGGTGCTCCTGTTTACCTTTCTGCTGTTCTTGAGTATCTCGCCGCTGAGGTATTGGAATTGGCTGGAAATGCAGCAAGGGACAACAAGAAGAACAGAATAGTTCCTCGTCACATTCAATTGGCAGTAAGGAACGATGAGGAACTGAGCAAGCTACTTGGATCAGTGACCATTGCAAACGGTGGTGTTTTGCCAAACATTCATCAGACTCTTTTGCCACCAAGGAAGGGCGGTGCTAAGGGAGATATCAACTCTGCTTCTCAGGAGTTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_75800.p1 GENE.S_Transcript_75800~~S_Transcript_75800.p1 ORF type:5prime_partial len:180 (+),score=30.05,Histone_H2A_C|PF16211.1|1.1e-16,Histone|PF00125.20|7.4e-15 S_Transcript_75800:1-540(+)
LIFSQRKLTCFRLHPPTSLRSFLSLLGFRSPLGFRRRKMSSKEGASTKGGRGKPKASKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPPRKGGAKGDINSASQEF*

Click here to download the sequence:
Link to NCBI Protein BLAST