Transcript Information: S_Transcript_76240.p1


Annotated TAIR IDAT5G46860.1
Annotated Gene NameSyntaxin/t-SNARE family protein
Annotated Gene Symbol(s)VAM3, ATVAM3, SYP22, ATSYP22, SGR3
Annotation TypeOrtholog
Chromosome Positionchr5:19012342-19013795 | Reverse length=268
E-Value2.5E-94
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7309269096052
Replicate 20.26905840923799
Replicate 30.89964566261466
Condition 2: 8 Hour
Replicate 12.2539030416482
Replicate 21.2731946380332
Replicate 31.473046379206
Condition 3: 24 Hour
Replicate 11.2432047514972
Replicate 21.1055517842121
Replicate 32.9733304380015


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_76240.p1 GENE.S_Transcript_76240~~S_Transcript_76240.p1 ORF type:complete len:246 (+),score=53.89,Syntaxin_2|PF14523.2|2.5e-32,Syntaxin_2|PF14523.2|30,Syntaxin|PF00804.21|8.1e-08 S_Transcript_76240:229-966(+)
ATGAGTTTTGCAGATTTGGAAGTAGGTAGGCCTTTGCCTACAAGGAAGCAACAACAGCAAAAGGACAAAGACCCCTCAAACGCAGTGGCCGCCGGAATATTCCAGATAAATACGGCTGTCTCCACCTTTCAACGCCTTGTTAACACCCTTGGCACCCCTAAGGATACCCTTGACCTTCGTGATCGACTTCGTAAGACAAGGGTACATATTAGTCAGCTGGTTAAAGAAACCGCTGCAAAGCTCAAGGAAGCCAGTGAAACAGATCTGCATTTTGAAGTCAGTGCTAGCAAGAAGATTGCTGATGCTAAACTTGCAAAAGATTTCCAGGCAGTTCTTAAGGAATTCCAAAAGGCACAGAGACTTGCAGCTCAAAGAGAAACTGCTTATTCTCCCTTTGTTCCAAAGGAAGTGCCTTCATCTCGGTCCAAGATAGATGTTGAGGAGGTAGACTCATTTCAGAGGCAGGAGCAGCAGGCCCAGCTATTGCACTCCAGAAGAGAGGAGGTAGTACTTCTAGACAATGAGCTTCTTTTTAATGAAGCCGTTATCGAAGAAAGAGAGCAAGGAATTCAGGAAATCCAACAACAGATTGGTGAAGTGAATGAGATCTTTAAAGACCTCGCGGTGCTAGTCCAGGATCAGGGTGTCTTGATAGGCAGGCATTTTATCTGTTCACAATGTGTTGTTCTCCCTCATGATTATTCTGCACTAAAAATTGGTTTACCTCATTTCAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_76240.p1 GENE.S_Transcript_76240~~S_Transcript_76240.p1 ORF type:complete len:246 (+),score=53.89,Syntaxin_2|PF14523.2|2.5e-32,Syntaxin_2|PF14523.2|30,Syntaxin|PF00804.21|8.1e-08 S_Transcript_76240:229-966(+)
MSFADLEVGRPLPTRKQQQQKDKDPSNAVAAGIFQINTAVSTFQRLVNTLGTPKDTLDLRDRLRKTRVHISQLVKETAAKLKEASETDLHFEVSASKKIADAKLAKDFQAVLKEFQKAQRLAAQRETAYSPFVPKEVPSSRSKIDVEEVDSFQRQEQQAQLLHSRREEVVLLDNELLFNEAVIEEREQGIQEIQQQIGEVNEIFKDLAVLVQDQGVLIGRHFICSQCVVLPHDYSALKIGLPHFR*

Click here to download the sequence:
Link to NCBI Protein BLAST