Transcript Information: S_Transcript_76574.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.34339356432491
Replicate 20.99638404453293
Replicate 30.83289775861422
Condition 2: 8 Hour
Replicate 10.27516632667268
Replicate 21.2990105661777
Replicate 31.2376943770634
Condition 3: 24 Hour
Replicate 10.98654312538167
Replicate 21.6083995312246
Replicate 31.464505804168


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_76574.p2 GENE.S_Transcript_76574~~S_Transcript_76574.p2 ORF type:complete len:155 (+),score=26.74,UBN2_3|PF14244.2|4.5e-39 S_Transcript_76574:1091-1555(+)
ATGGCTGAAGTTCCTGTTTCGAGCTCAAGCAATGTTACGATTGATCCTACAAATCCTCTCTATCTACACCCTAGTGATCATCCTGGTATGAATCTAACTAGTTCTCCTTTTGATGGAAATGGCTTCAATTCTTGGAAACGAAGTATGTTGATCGTACTTTCTGCTAAAAACAAACTTGGTCTTGTTAATGGTACTATTGTTAAACCTTCTACTTATTCTGTTGCCTTAGTTGCTTGGGAGAGATGTAATAATATGGTCATTTCTTGGTTGCTGAATGCTCTCACTAGAGATATAGCTGATAGTGTGTTGTATTGTGAAACTGCTGAGGAAATCTGGAAAGAATTAAATGAAAGGTTTGGTCAATCCAATGGTCCACAATTATATAGACTGCAAAAAGATATCAATGAGATATCCCAAGTTTGTACTGATGTCCCTGTCTACTTTACCAAGATGAAGAAACTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_76574.p2 GENE.S_Transcript_76574~~S_Transcript_76574.p2 ORF type:complete len:155 (+),score=26.74,UBN2_3|PF14244.2|4.5e-39 S_Transcript_76574:1091-1555(+)
MAEVPVSSSSNVTIDPTNPLYLHPSDHPGMNLTSSPFDGNGFNSWKRSMLIVLSAKNKLGLVNGTIVKPSTYSVALVAWERCNNMVISWLLNALTRDIADSVLYCETAEEIWKELNERFGQSNGPQLYRLQKDINEISQVCTDVPVYFTKMKKL*

Click here to download the sequence:
Link to NCBI Protein BLAST