Transcript Information: S_Transcript_76786.p1


Annotated TAIR IDAT1G73240.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup (InterPro:IPR019049); Has 36 Blast hits to 36 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:27542397-27544668 | Reverse length=519
E-Value2E-74
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.1860635281554
Replicate 22.3305763617093
Replicate 33.5500102320546
Condition 2: 8 Hour
Replicate 13.4040529144719
Replicate 22.1006430647631
Replicate 33.8528644732008
Condition 3: 24 Hour
Replicate 12.4613953228838
Replicate 22.5004674743857
Replicate 31.5393736021902


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_76786.p1 GENE.S_Transcript_76786~~S_Transcript_76786.p1 ORF type:internal len:426 (+),score=65.16,Ndc1_Nup|PF09531.6|0.00021,Ndc1_Nup|PF09531.6|1.6 S_Transcript_76786:1-1275(+)
CCTGAGTTCTCACATAAAGGAAAAGAATCCTTCTTAAACCCTTTCTCTCTAAACACTTCACCACTTCATTCACTCAATACCAGTAGCAGTAGCACCACCATGTCGCCACCATCAGAAATCACCAACAACCGCTTCCTAGGTTTCCTCATATGGCAATCAATTCAAAGCACCACCATTTTCATCCTTTCCAAATCTATTATTCTCTCTCCTTTTACCTACAAACCCTTTCTTCCCTCTTTATTCGGTTTCCTTAACCTCCTCTTCTTCCTTCTCTCTATGCTCCTTTTTTCCTTCTCCCTCCAAACTGTTGCCTCTCCCCAGCATCGCCGCCCTTCTTCTCCCTCCCAACTCGCTATCGGCTTGCTCCGATTCATCTTCACCTCTTCATCCCCACCTCCCCAAATCTGGGTTTCTCTGACCATGCTTCTTCTCATAATCATCTCGGTTTTTTCGGGTTTTCTGGCGGTTGTTTCGGTTGTTGGCACTAGCTACTCAGCGTCCTTTGGTGTGTTGATTAATAACTTGGGGCTTAGGGCTGTTGCTGTTGGTTTGCTTTATGGTTTGTATTGTGTGTTCTATCAACGATGGGTCTTGGCTTTCCCTATTGTTCAGCGTCCCCCTTTTTATAGCTATAAGATGGGGATTCTTTCAGCTGTCAGACAAGCTATCAAGCTCTCAGTGGTGGCATTCTTGTTCTCGGTCATTTTCGTTGTCCTTTTACCTAATCAGTTTAAAGGTGAAGTTGCAGAGGAATATTTTGCTGAGCAATTCATGTTTTGGTCAGCGAGTTTCACAGTATTCCTATCTTGGGAGCTGATACTTCATTTGCACAAGGTTTTGCATACAAAGAGATTTATGTTTGCTCCATCGAAAGGATCTTCTGCTATTGAAACAAATCCTAGTGAACCTCTTTTGGCCGCTTTAGAGGATAGCTCTCCTAGTTCTCTTCTTCAGTATCTTGCATATCTTGATTTATGCATGGTATGTGGAAGTAATGTTGATTCCTGGCGCCGAGCTGCCTTCTTTGAAGAAACTGGTGAAACTTACAAAAGAGTGGTTGGTGCATGCTTGAGACCTTTGGAGCAACTTGCGTCAAAGCTGGCTGAAGGATTAACAACTTCATCTGATAACACACAGAAGCTGTCCCATCAACTATGCTCACCAGAGGACATTCGTCAAAGTCCTGAAATTCTGGAATTATTCAATGATTTTCAGTTGTATGCATGGTGTGCACAATCTGTTGCATCACTAGAAGTACACTCGCACAAGGAAGAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_76786.p1 GENE.S_Transcript_76786~~S_Transcript_76786.p1 ORF type:internal len:426 (+),score=65.16,Ndc1_Nup|PF09531.6|0.00021,Ndc1_Nup|PF09531.6|1.6 S_Transcript_76786:1-1275(+)
PEFSHKGKESFLNPFSLNTSPLHSLNTSSSSTTMSPPSEITNNRFLGFLIWQSIQSTTIFILSKSIILSPFTYKPFLPSLFGFLNLLFFLLSMLLFSFSLQTVASPQHRRPSSPSQLAIGLLRFIFTSSSPPPQIWVSLTMLLLIIISVFSGFLAVVSVVGTSYSASFGVLINNLGLRAVAVGLLYGLYCVFYQRWVLAFPIVQRPPFYSYKMGILSAVRQAIKLSVVAFLFSVIFVVLLPNQFKGEVAEEYFAEQFMFWSASFTVFLSWELILHLHKVLHTKRFMFAPSKGSSAIETNPSEPLLAALEDSSPSSLLQYLAYLDLCMVCGSNVDSWRRAAFFEETGETYKRVVGACLRPLEQLASKLAEGLTTSSDNTQKLSHQLCSPEDIRQSPEILELFNDFQLYAWCAQSVASLEVHSHKED

Click here to download the sequence:
Link to NCBI Protein BLAST