Transcript Information: S_Transcript_76788.p1


Annotated TAIR IDAT1G73240.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup (InterPro:IPR019049); Has 36 Blast hits to 36 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:27542397-27544668 | Reverse length=519
E-Value5.5E-154
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.1302758026333
Replicate 26.4106973431269
Replicate 35.4980232098281
Condition 2: 8 Hour
Replicate 19.7372536919739
Replicate 29.286427737245
Replicate 310.899235284811
Condition 3: 24 Hour
Replicate 14.8223610724519
Replicate 24.7465718584426
Replicate 36.3768942458218


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_76788.p1 GENE.S_Transcript_76788~~S_Transcript_76788.p1 ORF type:complete len:530 (+),score=89.16,Ndc1_Nup|PF09531.6|0.00024,Ndc1_Nup|PF09531.6|3.2e-11 S_Transcript_76788:109-1698(+)
ATGTCGCCACCATCAGAAATCACCAACAACCGCTTCCTAGGTTTCCTCATATGGCAATCAATTCAAAGCACCACCATTTTCATCCTTTCCAAATCTATTATTCTCTCTCCTTTTACCTACAAACCCTTTCTTCCCTCTTTATTCGGTTTCCTTAACCTCCTCTTCTTCCTTCTCTCTATGCTCCTTTTTTCCTTCTCCCTCCAAACTGTTGCCTCTCCCCAGCATCGCCGCCCTTCTTCTCCCTCCCAACTCGCTATCGGCTTGCTCCGATTCATCTTCACCTCTTCAACCCCATCCCCCCGAATCTGGGTTTCTCTAACCATGCTTCTTCTCATAATCGTCTCTGTTTTTTCGGGTTTTCTGGCGGTTGTTTCGGTTGTTGGCACTAGCTACTCAGCGTCCTTTGGTGTGTTGATTAATAACTTGGGGCTTAGGGCTGTTGCTGTTGGTTTGCTTTATGGTTTGTATTGTGTGTTCTATCAACGATGGGTCTTGGCTTTCCCTATTGTTCAGCGTCCCCCTTTTTATAGCTATAAGATGGGGATTCTTTCAGCTGTCAGACAAGCTATCAAGCTCTCAGTGGTGGCATTCTTGTTCTCGGTCATTTTCGTTGTCCTTTTACCTAATCAGTTTAAAGGTGAAGTTGCAGAGGAATATTTTGCTGAGCAATTCATGTTTTGGTCAGCGAGTTTCACAGTATTCCTATCTTGGGAGCTGATACTTCATTTGCACAAGGTTTTGCATACAAAGAGATTTATGTTTGCTCCATCGAAAGGATCTTCTGCTATTGAAACAAATCCTAGTGAACCTCTTTTGGCCGCTTTAGAGGATAGCTCTCCTAGTTCTCTTCTTCAGTATCTTGCATATCTTGATTTATGCATGGTATGTGGAAGTAATGTTGATTCCTGGCGCCGAGCTGCCTTCTTTGAAGAAACTGGTGAAACTTACAAAAGAGTGGTTGGTGCATGCTTGAGACCTTTGGAGCAACTTGCATCAAAGCTGGCTGAAGGGTTAACAACTTCATCTGATAAAACACAGAAGCTGTCCCATCAACTATGCTCACCAGAGGACATTCGTCAAAGTCCTGAAATTCTGGAATTATTCAATGATTTTCAGTTGTATGCATGGTGTGCACAATCTGTTGCATCACTAGAAGTACACTCGCACAAGGAAGACAGATTTGGAGTTGCTCAGCTTTCTGGGAGTCATGTTACTGTGGTATCAACATTACTATCTTGTCTTCTTGCCGTTGAAACATACATGGGAAAGAAGATCAACTTGCAGTCTCCAAATCATATGCTTGGTCCTGCTGGCATAAAATGGGCTACAAACAGCACAGCAAGGAGAGAGATTGTGACAGCCATGAACAAAAGAAGAGGTAGCTCTTCACACTCAAAGTCCTATGCATTAGCAGATGTTTTGAAGACATCTATTTACTCCATTGTATCTGAATTCCATGAGGAGATGCTGGCTAGCCTTAAAATGGGGCTTTTGGAGAAATATTGGGTGAACAATGCCAAACCTTTGTATGGTTCTGTCGAACTTTTAGGCCAAAAATTGCACTTTTTTTTGAATTTTCAAGCTAGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_76788.p1 GENE.S_Transcript_76788~~S_Transcript_76788.p1 ORF type:complete len:530 (+),score=89.16,Ndc1_Nup|PF09531.6|0.00024,Ndc1_Nup|PF09531.6|3.2e-11 S_Transcript_76788:109-1698(+)
MSPPSEITNNRFLGFLIWQSIQSTTIFILSKSIILSPFTYKPFLPSLFGFLNLLFFLLSMLLFSFSLQTVASPQHRRPSSPSQLAIGLLRFIFTSSTPSPRIWVSLTMLLLIIVSVFSGFLAVVSVVGTSYSASFGVLINNLGLRAVAVGLLYGLYCVFYQRWVLAFPIVQRPPFYSYKMGILSAVRQAIKLSVVAFLFSVIFVVLLPNQFKGEVAEEYFAEQFMFWSASFTVFLSWELILHLHKVLHTKRFMFAPSKGSSAIETNPSEPLLAALEDSSPSSLLQYLAYLDLCMVCGSNVDSWRRAAFFEETGETYKRVVGACLRPLEQLASKLAEGLTTSSDKTQKLSHQLCSPEDIRQSPEILELFNDFQLYAWCAQSVASLEVHSHKEDRFGVAQLSGSHVTVVSTLLSCLLAVETYMGKKINLQSPNHMLGPAGIKWATNSTARREIVTAMNKRRGSSSHSKSYALADVLKTSIYSIVSEFHEEMLASLKMGLLEKYWVNNAKPLYGSVELLGQKLHFFLNFQAS*

Click here to download the sequence:
Link to NCBI Protein BLAST