Transcript Information: S_Transcript_77320.p1


Annotated TAIR IDAT4G38440.1
Annotated Gene NameLOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:17989115-17994549 | Forward length=1465
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.6205394782553
Replicate 25.0893305973163
Replicate 35.2839004607616
Condition 2: 8 Hour
Replicate 17.5227603879457
Replicate 28.1938611275563
Replicate 36.617066802528
Condition 3: 24 Hour
Replicate 16.2854296669256
Replicate 25.0194085761113
Replicate 35.338408171635


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_77320.p1 GENE.S_Transcript_77320~~S_Transcript_77320.p1 ORF type:complete len:1630 (+),score=339.38,RPAP1_C|PF08620.6|7.7e-15,RPAP1_N|PF08621.6|8.3e-15 S_Transcript_77320:386-5275(+)
ATGGAGAAAAATGGCGGAAAGCCAAATAAGTTGGAAAGGGAAAGAGTATTGGGAGGAACAAAGGCAGTAGAATTATCAGAAGATGAAGCCTCAAAGCTGGTTGGGGGTATTGTTGAGAAGGGCATTTCTGGTAATTTTCCGACTCCCCCTTCTTCAGCACCTCGACCATCTGTTCTTCCTTTTCCTGTTGCTCGCCATCGCTCTCACGCTCCTCATTGGACTCCAAGGGTTACTCAATTTACTAGTACTTCTGGTGGTGGGTATGATGATGAAGATGAAGATGGTGATGAAGATAATGATCCTACAAATTATAACCCTATTGCAGACTTTGCTAACCCTATTCAAAGGAAGAAAAAGAAAGAATTAGATTTTAGTAAGTGGAGACATTTGGTTCCTTCTAATAATAGCATCTCGAATATCAATGGCAATGACAAAAACCGTAGTGTGAAACCTGGTGCACGAAAACAAAAGATGAATGGAAAATCCGTGAGGATTACTGACAAGGGAAGTTTGGGTAATGAGCCATCAGTGGTGATAGCTATGGACAATGATTCACCATCTAACTTATATGGGGCATGTAGTAAACCTGTGACAGTTGATACAGTCTCTGAGCCTACGAGGTCAGTGTCTATGGAAGTAGATAGTTTGAATGAATTATCTTCATCAAGAAGCAATGATCTTGAGCAATCAAGGTCAGAACGTGATCAGTTAGGCAATGTTGGCAGTAATTTAGCAGGCCTAATTAGTGGTGACGAGGAAAATAGTCTCAACCGTGAGGCTCAGAATGATATATTGTCTTACAAGGAGGTGGATATGGCTATGAAAGAGTTTCCATCGCTTGACATTCTAGGTGCAAGGGGCAATAATGCTTCGGCAACATTTGGGTCTAGCAGTGTAGGTTATAATGAGGAAGGACCAACAAGTATAGAGAATCAGATAGATGCTGAAAATCGTGCCTTGTTACAAAGAATGTCCCCTGAAGATATTGCAGAAGCACAGGCAGAGATAAGAAATAGGATAGATCCCGAACTGCTTAAGATTTTGAAGAAACGAGGGCAACAGAAATTGGAGAAGCAGAGAAACTCCACCTGCACTTCAAGTGCTGGTGATGTGCTAGTTTCAGGTGATACAAAAGGTGGAAAACATATAACTAAAGGTGAGCTTCAATCTTCCATTCCAGAAACTAATCTCTCTCCAACAGATAGAACTCCAGCCCTGAAAAATATAGAGAAAAGGCCAGATGATGGTGATGTTCAGAATTCGACATCAAAAGGTGGCAGCTTGTGGGATGATTGGAGTAAACGGGTTGAGTCTGTGAGGAATCTGAGGTTTTCATTGGAAGGAAATGCTATTGAAGGAAGTGCTTTGGGTCAAACATATAATGCTGACAATGTTGCTGAACGGGACTTCTTGAGAACAGAAGGGGACCCTGGTGCTGCAGGGTATACAATAAAGGAGGCTCTAGCTCTAACAAGGAGTATTGTTCCTGGACAACGGGCTCTTGCATTGCATCTCCTTGCATCTGTTCTTAGTAAAGCTTTGCACAACATTTACAAAAGCCAACATGATACTACAAGGACCAATGATGATTCTGTTGACTGGGAGGCCATTTGGGCTTATGCTATTGGTCCAGAGCCTGAGTTTGTTCTATCTCTGAGGATGGCGCTTGATGATAATCATAATTCTGTGGTTTTAGCTTCTGCCAAAGTCATTCAATGCATGCTAGCCTGTGAAGTGAATGAAAACTTCTTCAACACAATAGAGAAAATGGCATCAAAAGATCTGTATACTGCACCTATATTTCGAAGTAGACCTGATATCAAACATGGTTTCCTCGGTGGTGGGTTTTGGAAATATAGTACCAAGCCATCCAATATTCGTCCCCCTGATGAGGAAATTCTGAATGACAAGAATGAAGAACCTACTATTCAGGATGATAATATTGTTGCTGTTCAGGATGTTGCAGCTGGCCTGGTTCGGATGGCCATCCTTCCTAGGCTTTGTTATATTTTAGAGACAGACCCAGCAGTGTCCTTGGAGGAAAGCACGTTGTCAATACTAATTGCCTTAGCTAGGCATTCACCAACATGTGCAAATTCAATATGGAAATGTGAAAGGCTTCTCCAGACTATTATTGACAGATATACTACGAAAGACACTAAAGACCTTCAAGTCTCTAAAATCAAAAGTGTGACTCTTTTAAGAGTGTTAGCTCAATCAAGCCAGACCATTTGTACAGAGTTTATCAAGAAAGGGTTCTTCCAAGTTGTGACTTGGCAATTATATCGTGTGACTTCTTCCATTGATGAGTGGGTGAAATCCGGGAGAGAGACTTGTAAGCTAGTTTCAGAGCTGATGATAGAACAATTACGTTTTTGGAAGGTCTGCATCATGTATGGTCATTGTGTTTCTTACTTTTCAAACTTCTTCCCTGCACTGTGCCTATGGCTAAATCCTCCTACATTAGACAAACTGATAGAATTGAATGTCTTCCATGAATTTGCTTCCATCAGTAAGGAAGTGTACCTTGTCTTAGAAGCATTAGCTAGAAAGCTACCTGATCCATATTCACCAGGAAATACTAGCCATCAACTTCGAGGTGGTATTAGTGATAATGTAGAAACTTGGTGTTGGAGTGATGTTTGCCCAATGGTTGCTTCGGCTTTGAAGTGGGTAGAGTTGATGAGTGATTCGCCATCTCCAAAGTTACTATGCGATAGTACGTATGTATCCTCCTTTCTATATATACTGTCTGCTATTACACACATGCTCGATGCTGTGCTCATACAAGCAGCTTCAGGAAATGCATCTGAGTTAAAAAGGGGCAGTCATATTGGGGCAATGTTCCAGGACTTGGTTGCTAAAATTTCCCTTCAAATCATTAAAGCCGGCTTCCTGAACTTTTCTAATCAAAGGATGAATGAGCATTCAACAGAACAATGTGGGATGCACTTTTCCATTGAAAAGTTGTGTTGTCTCAGACATGACTCTGATACTGAAGTGTCCCTGGCTTCTGTGTGGTGTCTTCATGGAATATTCCGTTTAATAGTCTCTATTGATTGTTGCATTCAAATGATCAGGGACAAGGATGGACTTGTGCGTTTCTGTGGAAATGAATGCTACAGTGGAATATTCGAACAGGGCATACTTAAGGTTTCAATTGGCCAATGGAGAACTGTGATTTCTGAATTCATGAAGTTAGTCACATCAGAATGGCACTTAGTGAATAGTATTGAGGTGTTTGGCAGGGGAGGTCCAGCTCCTGGTGTTGGAGTTGGATGGGGTGCTTCGAGCGGTGGATTTTGGTCTTTAATTGTTGCTTTGGTTCAAGCAGATGCAAAATTGCTAACTGAGCTGCTTGAAACATTTTATCGTTCCCCTGCCGTAGATCTTCCTGGAGTAATGGAGGAGACTTTTATCACACAAAGTATCACTTCTGCCTTAGCATTGAGTTTAATGGTGGGTCCAGGTAACAAGGCGACCTTACAGAGTGTATTTAATGTGTTGCTGCAAATCCCCATTCTCAAGTATTTTGATCAATGTATCTTCCAATTTTTTCATCATTATCATGGACAAGAGCTTGTCAAATGGGAATATAGGGAGGGTGACCTCATGAGGTTCAGTAAGATTCTGGGTTCTCACTTCAGAAATAGATGGTTGTCTCTCAAGAAGAAGAAGAAAGCAAAGGATGACAAAAACAATGGTAATAAAACAGATAAGAAGGGTGGCAGTTTGCTGGGTACCATTCATGAAGACGTGGAAACCGCAGCTATGACCAATGAAGATAGCAAGTCTTTAAATGCCGAGTGGGCCCACCAGCGATTACCTCTTCCCAGCCACTGGTTGCTCAGCCCTATCACCACCATAATTGACAGTACACCTAGTGATGTACTGAACAGTTCAACTGGAGAACCTTTAGTGCAAGAGCCGACGGAATTTATTGAACTTGCTAAAGCTGGTCTCTTCCTCCTGTTGGGTATTGAAGCGATGTCCTCCAAACTTTCAAAAGAAGACAACTCTCCTCTTCAGAGCATACCGTTAATCTGGAAATTGCATTCATTATCGGTACCATTACTTGGTGGGATGGGTGTTCTTGAAGAAGAAAGGAGTAGGGATGTGTTTGAAGCGTTACAGTCTCTCTATGGTCGACAGCTAGATGAATTACAGTTCAATACCACCACAGCTGTTACTGACATGGTTAAGACTGGGCGAAGAAGTGATACACTCGGGGTTGGTTGTCTGAGGTTTCAATCTGAGATCCATGAGAATTACTCCACATTTATTGAAACTCTTGTAGAGCAATTTTCTGCTATATCTTATGGTGATTTGGTCTATGGACGACAAATCGCGATTTATCTTCATAGACAAGTTGATGCTTCTGTGAGACTTGCAACCTGGAACTCTCTATCTAATGCCCGTGTTCTTGAACTCTTGCCACCATTGAATGACTGTTTATCCCAAGCCAAAGGGTACCTGGAACCTATTGAGGACAATGACAGCATATTGGAAGCCTTTGTTAAATCCTGGATTTCTGGCTCCCTTGACAGAGCTGCAACTCGGGCCTCTATGACATATACTATTGCTGTACACCATCTGTCATTGTTTGTTTTTAACGATCTTGAAGACAAGCTGTTGTTGCGAAATAAACTTGTGAAATCGTTGTTAAGGGACTATTCACGCAAGCGCCAACATGAGGCCATGATGTGGGATTTCATCCAGTATAAGTACTGTTTCGAAATTCAGAAGACGGAGCAGAGCATCAAGAACCCATTGCAGATGGATTACATAGATCAACGATTCGGGCTGCTCAAAGAAGCTTGCGAAGGAAATTCACAGCTCTTGGCAGTGGTGGAGAAACTCCAATCTTCCATTGCTAAGAGGCCGATATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_77320.p1 GENE.S_Transcript_77320~~S_Transcript_77320.p1 ORF type:complete len:1630 (+),score=339.38,RPAP1_C|PF08620.6|7.7e-15,RPAP1_N|PF08621.6|8.3e-15 S_Transcript_77320:386-5275(+)
MEKNGGKPNKLERERVLGGTKAVELSEDEASKLVGGIVEKGISGNFPTPPSSAPRPSVLPFPVARHRSHAPHWTPRVTQFTSTSGGGYDDEDEDGDEDNDPTNYNPIADFANPIQRKKKKELDFSKWRHLVPSNNSISNINGNDKNRSVKPGARKQKMNGKSVRITDKGSLGNEPSVVIAMDNDSPSNLYGACSKPVTVDTVSEPTRSVSMEVDSLNELSSSRSNDLEQSRSERDQLGNVGSNLAGLISGDEENSLNREAQNDILSYKEVDMAMKEFPSLDILGARGNNASATFGSSSVGYNEEGPTSIENQIDAENRALLQRMSPEDIAEAQAEIRNRIDPELLKILKKRGQQKLEKQRNSTCTSSAGDVLVSGDTKGGKHITKGELQSSIPETNLSPTDRTPALKNIEKRPDDGDVQNSTSKGGSLWDDWSKRVESVRNLRFSLEGNAIEGSALGQTYNADNVAERDFLRTEGDPGAAGYTIKEALALTRSIVPGQRALALHLLASVLSKALHNIYKSQHDTTRTNDDSVDWEAIWAYAIGPEPEFVLSLRMALDDNHNSVVLASAKVIQCMLACEVNENFFNTIEKMASKDLYTAPIFRSRPDIKHGFLGGGFWKYSTKPSNIRPPDEEILNDKNEEPTIQDDNIVAVQDVAAGLVRMAILPRLCYILETDPAVSLEESTLSILIALARHSPTCANSIWKCERLLQTIIDRYTTKDTKDLQVSKIKSVTLLRVLAQSSQTICTEFIKKGFFQVVTWQLYRVTSSIDEWVKSGRETCKLVSELMIEQLRFWKVCIMYGHCVSYFSNFFPALCLWLNPPTLDKLIELNVFHEFASISKEVYLVLEALARKLPDPYSPGNTSHQLRGGISDNVETWCWSDVCPMVASALKWVELMSDSPSPKLLCDSTYVSSFLYILSAITHMLDAVLIQAASGNASELKRGSHIGAMFQDLVAKISLQIIKAGFLNFSNQRMNEHSTEQCGMHFSIEKLCCLRHDSDTEVSLASVWCLHGIFRLIVSIDCCIQMIRDKDGLVRFCGNECYSGIFEQGILKVSIGQWRTVISEFMKLVTSEWHLVNSIEVFGRGGPAPGVGVGWGASSGGFWSLIVALVQADAKLLTELLETFYRSPAVDLPGVMEETFITQSITSALALSLMVGPGNKATLQSVFNVLLQIPILKYFDQCIFQFFHHYHGQELVKWEYREGDLMRFSKILGSHFRNRWLSLKKKKKAKDDKNNGNKTDKKGGSLLGTIHEDVETAAMTNEDSKSLNAEWAHQRLPLPSHWLLSPITTIIDSTPSDVLNSSTGEPLVQEPTEFIELAKAGLFLLLGIEAMSSKLSKEDNSPLQSIPLIWKLHSLSVPLLGGMGVLEEERSRDVFEALQSLYGRQLDELQFNTTTAVTDMVKTGRRSDTLGVGCLRFQSEIHENYSTFIETLVEQFSAISYGDLVYGRQIAIYLHRQVDASVRLATWNSLSNARVLELLPPLNDCLSQAKGYLEPIEDNDSILEAFVKSWISGSLDRAATRASMTYTIAVHHLSLFVFNDLEDKLLLRNKLVKSLLRDYSRKRQHEAMMWDFIQYKYCFEIQKTEQSIKNPLQMDYIDQRFGLLKEACEGNSQLLAVVEKLQSSIAKRPI*

Click here to download the sequence:
Link to NCBI Protein BLAST