Transcript Information: S_Transcript_77440.p1


Annotated TAIR IDAT4G35800.1
Annotated Gene NameRNA polymerase II large subunit
Annotated Gene Symbol(s)NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_I
Annotation TypeOrtholog
Chromosome Positionchr4:16961115-16967892 | Reverse length=1839
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 135.464504942706
Replicate 239.470572966631
Replicate 339.02023575783
Condition 2: 8 Hour
Replicate 148.587519330611
Replicate 249.316404803617
Replicate 346.082832441245
Condition 3: 24 Hour
Replicate 143.209659651725
Replicate 240.412979763245
Replicate 336.770599535664


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_77440.p1 GENE.S_Transcript_77440~~S_Transcript_77440.p1 ORF type:5prime_partial len:1365 (+),score=305.29,RNA_pol_Rpb1_5|PF04998.13|1.1e-107,RNA_pol_Rpb1_6|PF04992.10|2.7e-67,RNA_pol_Rpb1_7|PF04990.8|3.7e-54,RNA_pol_Rpb1_3|PF04983.14|3e-51,RNA_pol_Rpb1_3|PF04983.14|8.2e+03,RNA_pol_Rpb1_4|PF05000.13|1.4e-39,RNA_pol_Rpb1_2|PF00623.16|2.4e-27,RNA_pol_Rpb1_R|PF05001.9|7e+03,RNA_pol_Rpb1_R|PF05001.9|1.6e+04,RNA_pol_Rpb1_R|PF05001.9|50,RNA_pol_Rpb1_R|PF05001.9|0.0013,RNA_pol_Rpb1_R|PF05001.9|0.15,RNA_pol_Rpb1_R|PF05001.9|0.016,RNA_pol_Rpb1_R|PF05001.9|0.29,RNA_pol_Rpb1_R|PF05001.9|0.29,RNA_pol_Rpb1_R|PF05001.9|0.003,RNA_pol_Rpb1_R|PF05001.9|0.016,RNA_pol_Rpb1_R|PF05001.9|0.27,RNA_pol_Rpb1_R|PF05001.9|0.28,RNA_pol_Rpb1_R|PF05001.9|0.052,RNA_pol_Rpb1_R|PF05001.9|0.015,RNA_pol_Rpb1_R|PF05001.9|0.3,RNA_pol_Rpb1_R|PF05001.9|1.6e+04,RNA_pol_Rpb1_R|PF05001.9|0.024,RNA_pol_Rpb1_R|PF05001.9|3.2,RNA_pol_Rpb1_R|PF05001.9|1.6e+04,RNA_pol_Rpb1_R|PF05001.9|75,RNA_pol_Rpb1_R|PF05001.9|1.6e+04 S_Transcript_77440:3-4097(+)
CTTCATAAAATGTCCATCATGGGTCACAGAATAAAGATTATGCCCTATTCTACATTTCGTTTGAATTTGTCTGTTACCTCACCGTACAATGCTGATTTTGATGGTGATGAAATGAACATGCACGTGCCACAATCCTTTGAGACTCGAGCAGAAGTTTTGGAGCTAATGATGGTGCCTAAATGTATTGTTTCCCCACAGTCGAACAAGCCTGTTATGGGAATTGTGCAGGATACCCTTTTGGGTTGCCGTAAAATTACGAAGAGGGACACATTTATAGAAAAGGATGTCTTTATGAATATTCTTATGTGGTGGGAGGATTTTGATGGGAAGGTCCCTCAGCCTACTATTTTGAAGCCCAGGCCTATTTGGACAGGAAAACAAGTTTTTAACCTTATCATACCAAAGCAGATAAACTTAATCAGGTTTGCGGCATGGCACCAGGAATCAGAAACAGGGTTTCTTACTCCTGGAGATACTAGAGTCCTAGTTGAGAAGGGGGAGTTATTATCTGGCACGCTCTGCAAGAAGACTCTTGGGACATCAAGTGGAAGTCTTATTCATTGCATTTGGGAAGAAGTTGGACCTGATGCAGCTCGCAAATTTCTGGGCCACACTCAGTGGCTTGTTAATTATTGGCTTTTACAGAATGGTTTTAGCATTGGGATTGGGGATACAATTGCTGATGCTGCAACGATGGAGATCATTAATGAGACAATATCTAAGGCCAAAAATGAAGTGAAAAATCTTATAAGGGCTGCACAGGACAAACAGTTGGAGCCTGAGCCTGGACGAACAATGATGGAATCATTTGAAAATAGAGTGAATCAGGTTTTAAACAAAGCTCGTGATGATGCTGGAAGTAGTGCTCAGCGAAGCTTGTCTGAGAGTAACAACCTGAAAGCTATGGTCACTGCAGGTTCCAAAGGAAGTTTCATCAACATATCCCAGATGACTGCTTGTGTGGGCCAGCAGAATGTTGAAGGCAAGCGTATACCTTTTGGTTTTGTTGGTCGAACATTGCCTCATTTCACAAAGGATGATTATGGGCCTGAAAGTCGTGGCTTTGTCGAGAATTCATATCTGAGAGGATTGACCCCCCAGGAGTTTTTTTTCCATGCCATGGGAGGTAGAGAAGGTCTTATTGATACTGCAGTCAAGACTTCTGAGACTGGTTACATTCAGCGTAGATTGGTCAAAGCTATGGAGGATATCATGGTCAAATATGATGGAACAGTGAGGAATTCCCTGGGAGATGTTATTCAGTTTCTTTATGGTGAAGATGGCATGGATGCTGTTTGGATAGAATCTCAGAAGTTGGATTCTCTGAAAATGAAGAAATCCGAATTTGATAAAACGTATAGATATGAGTTTGATGCTGATAACTGGGAGCCAGATTATATGTTGAAAGAACACGTAGATGATCTGAAAACTATTCGTGAGTTCCGTAATGTGTTTGATGCTGAAGTCCAGAAGCTTGAAGCGGATAGATTTCAACTTGCCACTGAAATAGCAACTACTGGTGACAACTCCTGGCCATTGCCTGTTAACCTTAAAAGATTGATTTGGAATGCCCAAAAGACCTTCAAGGTTGACATGCGAGAAAAGTCTGATATGCATCCCATGGAGATTGTGGAAGCCGTAGATAAGCTTCAGGAGAGGTTGAAAGTTGTTCCTGGTGATGATTTTTTGAGTACAGAGGCGCAGAAGAATGCCACTCTCTTCTTCAATATCTTACTTCGAAGTACACTGGCAAGCAAGCGTGTGTTGAAGGAGTTCAAGCTTAACCGTGAAGCATTTGAGTGGGTTATTGGTGAGATAGAGTCTCGTTTTCTGCAGTCACTTGTGGCCCCTGGGGAAATGATTGGCTGTGTTGCTGCCCAGTCAATTGGTGAGCCTGCTACTCAGATGACCCTCAATACTTTCCACTATGCTGGTGTTAGTGCCAAGAATGTCACTCTAGGTGTTCCCCGACTGAAGGAGATCATCAATGTAGCCAAGAAGATAAAAACTCCTTCTCTATCCGTCTTCCTAAAGCCTGATGTTAGTAAGACAAAGGAGAGGGCTAAAACTGTCCAATGTGCTTTAGAATACACTACTCTGCGCAGTGTGACACATGCCACTGAAGTGTGGTATGATCCAGATCCTATGAGCACAATAATCGATGAAGATGTAGACTTTGTCAAGTCATACTATGAAATGCCTGATGAGGAGGTTTCACCTGACAAAATATCTCCATGGCTCCTTCGTATAGAGTTGAATCGTGAGATGATGGTGGATAAGAAGTTGAGCATGGCTGATATTGCAGAGAAGATCAACTTGGAATTTGATGATGATTTGACTTGCATCTTCACTGATGACAATGCAGAGAAGTTGATACTTCGTATCCGTATCATGAATGATGAAGGTCCCAAGGGAGAGCTGCAGGATGAATCTGCTGAAGATGATGTGTTTCTTAAAAAGATTGAGAGCAACATGCTTACTGAAATGGCTCTTAGAGGCATTCCAGATATCAATAAGGTGTTCATTAAACAGGGAAAAGTGAATAAGTTTGACGAAGAGAAAGGATTTAAGGCTGAAACGGAGTGGATGCTCGATACCGAAGGTGTCAACCTTCTGGCGGTTATGTGTCATGAAGATGTTGATTCAACAAGAACAACCAGTAATCACCTGATTGAAGTTATGGAAGTTCTTGGGATTGAAGCTGTTCGTAAAGCCTTGCTGGATGAGTTGAGAGTTGTCATATCCTTCGATGGTTCATATGTGAACTATCGCCATCTGGCCATTTTGTGTGATACGATGACATATCGTGGACATTTGATGGCTATCACCCGTCATGGGATCAATCGGAATGATACTGGGACCTTGATGAGGTGCTCATTTGAAGAAACAGTGGATATACTTCTTGATGCTGCTGTATATGCTGAATCAGACTATTTGAGAGGTGTGACTGAAAATATCATGTTGGGACAGCTTGCTCCGATCGGAACGGGTGGATGTGCATTGTATCTCAATGAGGAGATGTTGCAGCACGCTATTGAACTCCAGCTTCCAAGTTACGTTGAAGGTTTGGAGTTTGGCATGACACCTGCTCGATCCCCTATCTCAGGGACTCCATACCATGATGGTATGATGTCTCCAAGTTACTTGTATAGCCCAAATCTCAGACTCTCACCCAGCACAGATGCTCAGTTTTCTCCATTTGTTGGTGGGATGACCTTCTCTCCAGCTGCATCTCCGTATGCGTCTCCAGGATCGCCAGGATATAGCCCCACTTCACCTGGCTATAGCCCAACTTCGCCTGGTTATAGCCCAACATCTCCAACTTACAGCCCTGGCTCTCCTGGCTACAGTCCGACAAGTCCAGCATATTCACCCACAAGTCCATCTTACTCTCCCACCTCACCCAGCTATAGCCCCACCTCTCCCAGCTACAGCCCCACGTCACCCAGCTACAGCCCCACATCACCCAGCTACAGCCCCACCTCACCAGCCTACAGCCCAACCTCGCCAGCCTACAGCCCTACGTCACCAGCATACAGCCCTACCTCTCCATCCTACAGTCCAACCTCTCCATCATATAGCCCTACATCACCTTCGTACAGCCCGACTTCACCATCATACAGTCCCACATCACCATCCTATAGTCCCACATCCCCCTCTTACAGTCCGACATCACCAGCATACAGTCCGACATCTCCTGGATATAGTCCTACATCTCCGAGTTATAGTCCCACTTCACCTAGTTACAGCCCTACATCTCCAAGCTATAATCCATCAGCCAAGTACAGTCCCTCGCTTGCATACTCTCCAAGCAGTCCAAGAATATCACCATCTAGTCCTTACAGTCCAACTTCTCCAAATTACAGCCCAACATCGCCATCATACTCACCAACATCACCATCTTATTCGCCATCAAGCCCAAGCTATAGTCCAAGCAGTCCCTACAATTCCGGTCCAAGTCCGGATTATAGCCCAAGTTCTCCACAGTACAGTCCAAGTGCAGGGTATTCCCCTAGCGCTCCAGGTTACTCACCATCATCCACCAGTCAGTACACCCCACAAATGAGTGAAAAGGATGACATGAGCAACAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_77440.p1 GENE.S_Transcript_77440~~S_Transcript_77440.p1 ORF type:5prime_partial len:1365 (+),score=305.29,RNA_pol_Rpb1_5|PF04998.13|1.1e-107,RNA_pol_Rpb1_6|PF04992.10|2.7e-67,RNA_pol_Rpb1_7|PF04990.8|3.7e-54,RNA_pol_Rpb1_3|PF04983.14|3e-51,RNA_pol_Rpb1_3|PF04983.14|8.2e+03,RNA_pol_Rpb1_4|PF05000.13|1.4e-39,RNA_pol_Rpb1_2|PF00623.16|2.4e-27,RNA_pol_Rpb1_R|PF05001.9|7e+03,RNA_pol_Rpb1_R|PF05001.9|1.6e+04,RNA_pol_Rpb1_R|PF05001.9|50,RNA_pol_Rpb1_R|PF05001.9|0.0013,RNA_pol_Rpb1_R|PF05001.9|0.15,RNA_pol_Rpb1_R|PF05001.9|0.016,RNA_pol_Rpb1_R|PF05001.9|0.29,RNA_pol_Rpb1_R|PF05001.9|0.29,RNA_pol_Rpb1_R|PF05001.9|0.003,RNA_pol_Rpb1_R|PF05001.9|0.016,RNA_pol_Rpb1_R|PF05001.9|0.27,RNA_pol_Rpb1_R|PF05001.9|0.28,RNA_pol_Rpb1_R|PF05001.9|0.052,RNA_pol_Rpb1_R|PF05001.9|0.015,RNA_pol_Rpb1_R|PF05001.9|0.3,RNA_pol_Rpb1_R|PF05001.9|1.6e+04,RNA_pol_Rpb1_R|PF05001.9|0.024,RNA_pol_Rpb1_R|PF05001.9|3.2,RNA_pol_Rpb1_R|PF05001.9|1.6e+04,RNA_pol_Rpb1_R|PF05001.9|75,RNA_pol_Rpb1_R|PF05001.9|1.6e+04 S_Transcript_77440:3-4097(+)
LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQINLIRFAAWHQESETGFLTPGDTRVLVEKGELLSGTLCKKTLGTSSGSLIHCIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNEVKNLIRAAQDKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPLPVNLKRLIWNAQKTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGDDFLSTEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKKIKTPSLSVFLKPDVSKTKERAKTVQCALEYTTLRSVTHATEVWYDPDPMSTIIDEDVDFVKSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFTDDNAEKLILRIRIMNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQGKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEEMLQHAIELQLPSYVEGLEFGMTPARSPISGTPYHDGMMSPSYLYSPNLRLSPSTDAQFSPFVGGMTFSPAASPYASPGSPGYSPTSPGYSPTSPGYSPTSPTYSPGSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAYSPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYNSGPSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSEKDDMSNS*

Click here to download the sequence:
Link to NCBI Protein BLAST