Transcript Information: S_Transcript_78244.p1


Annotated TAIR IDAT5G15540.1
Annotated Gene NamePHD finger family protein
Annotated Gene Symbol(s)EMB2773, ATSCC2, SCC2
Annotation TypeOrtholog
Chromosome Positionchr5:5047887-5057411 | Reverse length=1846
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.7081226680735
Replicate 26.5779569090625
Replicate 36.7619913883162
Condition 2: 8 Hour
Replicate 19.3276131707168
Replicate 29.4461707900474
Replicate 38.6891102533501
Condition 3: 24 Hour
Replicate 17.6904783540722
Replicate 26.6680725805761
Replicate 36.0328977633798


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_78244.p1 GENE.S_Transcript_78244~~S_Transcript_78244.p1 ORF type:complete len:1781 (+),score=336.78,Nipped-B_C|PF12830.3|1.5e+03,Nipped-B_C|PF12830.3|1.6e+03,Nipped-B_C|PF12830.3|3.9e+03,Nipped-B_C|PF12830.3|8.9e-50,Cohesin_HEAT|PF12765.3|9.4e+03,Cohesin_HEAT|PF12765.3|7.7e+03,Cohesin_HEAT|PF12765.3|3.2e-13,Cohesin_HEAT|PF12765.3|31,Cohesin_HEAT|PF12765.3|7.6e+03,Cohesin_HEAT|PF12765.3|3.4e+03,PHD|PF00628.25|5.1e-06 S_Transcript_78244:213-5555(+)
ATGAACAACAACAACAACCACAATCCGAACGATTGGACCCACAACAAAGGCATCACCCTTTCGAATACTTTACACTCTGAGGTTGCTCCTTGTTTTCCTTTACCTTCACTTCCACCGTTTTGTGGAGATTCCGATCAAGAGCTTCGTCTATTCGAGGACCAGCAAACTAGGCCTTTGAATCGCAATGATGTTCTTGCTCAGGCTAGCAAGATTGCTGATCTGCTACGTCATACCGACGTATCCTACTTGAATCTTAAAATTGAGGCCACTAAGAGCTGTGGTTCTTCTGTAGAGCCTATGTTCCTTTGTAATGAGGTTCTTCGTCACAATCCGGATGCCTTCGAGTGTACTCTTCCAGGTCCTCTGGAAGAGCGTATGTTTAGTGCAGAGACTGGTAGAAAGATTCATGAAATAAAACAACATTTTTCAAATCAAGTGCAAAGAGAGCAAGCGGAAAGCCAGAATTGTCAGCGTACTCATGTCCTTGATGATCTACCTTCGTCGTCTACAAAGCCCAGAGTCAAGAAGAAAGGAAGTCAGGGGGTGTCATGTGCTGTTGTTACAGATGCTGGTCAACATCAAGATGCTGTTGTTGCGCGATTCTGTGATGTTGTGGAGGACTTCTGTAGTAGGGCTGAAATTCCGGGTGAGGAGCGAGATGAAGCAGAGTGGTTACTGTTGCCAACTTCAGACATTAGAATTGTTGTGAATGAAATATTGTCAATCCGGGCAGAGAAACTGTTACCTCTGGTTCCTGTAGATCGTCTTGAGAAATTATTAAAGTTATTAGACCATCAAGTTCATCGTGCGGAAGGCCTGTCAATTGATGAGTGTGAGCATTCCGATTCGGGTGCTTCATCGATTTTCTGTGCTTTGGAGGCTATACATGCTGCTTTAGCTGTGTTGGCCTACAATGACATGTCTAAGCAACTCTATAAAGAAGAGATTATTGAAAGAATTCTTGAGTTTACTAGACGTCAGGTCATGGACATTATGTCAGCATGTGATCCTTCTTATCGTGCTTTGCATAGACCTGGTGATAATGGAGCTGCTGAAGGCGAAGATGACGCAGATGCTGATGTTGAATATGGTTCTGCCAGCAAAAAAAGGCGTACAAGTAAGAGTGTGAAAGTGAAAAGAACAATGGCAAACAGGGTTTCAGCTGCTGTCCACACCGCGTTCCAGAAGCTTTGCACTATTCTTGGTTTCTTGAAGGAGCTTTTGTTAATAGAGTTCCTCCCAGACAGCTGCGTCTTGCAGCTGGTTAAAACTAGCTTGTCAACATTCTTGGTTGACAATATCCAACTATTGCAAATGAAGGCTATGGGCCTAATCAGTGGGATATTCTATTCATATACACAACATAGGAGTCATGTTATTGAGGAAGTAGTTCAACTACTCTGGAAGCTACCATTCTCCAAGCGAGCAGCCAGGTCATGTCATTTACCTGATGAGGAACAGAAGCAGATCCAAATGATTACTGCATTGTTGCTTCAGTTAGTTCTTCATAGTGCCAATCTTCCTGAAATGTTGAGCCAAACCTCAAATAATAGTGCCATCTTTGAGAATGCAATTGAAACCAATTACCTGACTAAATGCAATGAGGTAGCCATAGAGACATGTGTTGCATTCTGGACGCATGTTCTTCAGCGGCTTACCAGTGTAAAGAGCCAGGATGCATCTGAGGTGAAGGTGATAATGGAGAATCTTGTACTGGATCTGTTAACCACATTAAATCTGCCGGAGTACCCTGCGTCTTCTCTTATTCTAGAAGTTCTTTGTGTTTTACTGCTCCAGAATGCTGGTCCTAAATCAAAAGATACATCTGTTCGCACAATGGCAATTGACATACTTGGTACAATTGCTGCAAGGTTGAAGCATGATTCTGTTATTTGCCAACTTGAGAACTTATGGATTGTGCAAGAGTTAGTAGGTAGGGATAATTCTGATCATAGTGTACTGAGGGATACATGTTCTGTTTGTTTGGATGGAGTGGTTGAGAAGGTTTTAGTGATATGTCAAGACTGTCAGAGATTATTCCATCCCAATTGTATGGGAGTCAGAGAACATGACATATCTACACGTGGTTGGCACTGTCCACTCTGTCTCTGTAAAAAACAACTTTTAGTCTTACAATCATACTGCAAGTCACAGTACAAGGATGACTGCAAAGCCAATCGCAGCATATCAGAGAAATCATGTGAATCTTCTGAGTCAGCTTCAACAATGGAGATTGTACAACAGATGCTTTTAAATTACCTGGAGGATACTGTCTCTTCTGATGACCTTCATCTTTTTGCTCGCTGGTTTTATCTCTCCCTATGGTACAAAGATGACCCAAAATCTCGACAACAGTTTTGCTACCGTCTTGCCAGAGTGAAATCAAAAACAGTTATCCGTGATTCAGGGGCCTTGTCATCTTCTTTGACCAGAGATTCTATTAAAAAGATAACTTTGTGTTTAGGACAGCATAGCTCCTTCTCCAGAGGATTTGATACAATTCTTGGAATGCTTCTGGTTAGCCTAAGGGAGAACTCACCTGTAATTAGGGCTAAGGCATTGCGTGCGGTTAGTATAATTGTAGAGGCTGACCCAGATGTTTTATGTGATAAACGGGTCCAATCAGCGGTGGAAGGAAGGTTCTGTGATTCTGCAATATCTGTCAGAGAAGCCGCCCTGGAATTGGTTGGAAGACATATTGCATCGCATCCAGATGTTGGGTTGCAGTATTTTGAAAAGGTAGCTGAGAGGATTAAGGATACTGGTGTAAGTGTTCGGAAACGAGCAATAAAAATTATCAGAGACATGTGCACATCAAATGCTGATTTCCCAGAATCTACCAATGCTTGCATTGAGATCATATCTCGTATCAGTGATGAAGAATCGAGTATTCAGGACCTTGTTTGCAAAACATTTTATGAGTTCTGGTTTGAAGAGCCATCAGGAAGACAATATTTTGGAGATGATAGTTCTGTGCCGCTGGAGGTGGCTAGAAAAACTGAACAGATAGTTGACATGTTGAGGAGGATGCCTAGCAATCAACCTCTAGTCACTGTCATTAAACGCAACTTGGCCCTTGATTTCTTGCCCCAGACAAAGATGATGGGGATCAATCCTGTATCGATGGCATCAGTGCGTAGGCGTTGTGAAATGATGTGCATGTTTTCAATGGAAAGGATTTTGCAGGTTGAGGAAATGAACCTCGAGGAAGGTGAGGTACGGATACTTCCATATGTGACAGTTTTGCATGCCTTTTGTCTTGTGGATCCATCACTTTGTGCGCCTGCTTCAAATCCTTCTCAGTTTGTGGTCACATTGCAGCCATATCTCAAGAATCAGGTTGATAATCGAGCTGTCGCACGACTATTGGAAAGTATCATCTTTATAATTGATGCTGTTCTTCCATTACTGCGGAAGCTGCCCCAAAGTGTTGTTGAAGAAGTTGAGCAGGATCTGAAGCAGATGATTGTCCGGCATTCCTTTTTGACAGTTGTACATGCGTGCATCAAATGCCTCTGCTCTTTGAGTAAGACTGCCGGAAAAGGAGCAAGGTTAATTCAATTCCTCATTCAGGTGTTCATTAAACGTTTAGATGCTCTGGGTGTTGATAACAAACAGCAAGTGGGCCGTTCTTTGTTTTGTCTTGGCCTTCTTATCCGTTATGGTAATGGTCTATTGAGCTCTTTCACCGGGGGTGTGGATATTGCTGGCAGTCTCAGTTTGTTCAAGAAGTATCTCCTTGCAGATGATTTTGTTATAAAGGTCCGAGCACTGCAGGCATTGGGCTTTTTTTTAATTGCGAGACCTGAGTGTATGCTGGAGAAGGATGTTGGAAAGATTCTCACAAGCACATTGTCTTCTGGTTGTGATGCTCGTCTCAAGTTGCAAGCTTTGCAAAATTTGTACGACTATCTCCTTGATGCTGAAAGCCAGTTAGGATCAGACAAAGTTGAAGATAATATTATCGATTGCTCTGGAGATGGGGGTTCTGCGGTGCCTGTTGCTGCAGGTGCCGGTGACACTAACATTTGTGGAGGAATAGTGCAGCTGTATTGGGATCGTATTTTGGAGAGAAGCTTAGACACAAATGACCAAGTTCGGCAATCTAGCCTGAAGATTGTAGAAGTTGCACTGCGCCAGGGCCTTGTTCACCCAATAACTTGCGTCCCATATCTCATTGCACTTGAAACAGATCCACTGGAGGCAAATTCGAAGTTAGCTCATCATCTGCTGATGAATATGAATGAGAAATATCCAGCCTTCTTTGAGAGCCGCCTGGGTGATGGTCTCCAGCTGTCATTTAACTTCATAAACTCAATGAGTGAGAATTCTGTGAATATGAACCCTAAGCTGCACTACAAGGGTGCTGAAAATGTGAACGGAAAGACTGAGGATGCAACATTTGCAAATGCAAGGCTAGGGGTATCTCGGATCTACAAGTTCATACGTGCAAACCGTGTTGCGAGAAATAAATTTATGTCATCCGTTGTTCGAAAATATGATAATCCTAGCTGGAGTGAAACGGTTGTTCCTTTCTTAATGTACTGCACAGATATTCTCTCGTTGCTCCCTTTCACAACACCTGATGAACCTCTGTACTTAGTTTATACTATAAATCGAGTAATACAAGTTAGATCTGGGACATTGGAAGCAAGCTTAAAAGCTTTTAGTCATCATTTTTCACAACGAAGCTCCCAGAAGGTTCATATGGAAAACGGTGGGAGTACTTGGCAGGAGTTAGCAGCTAACTCTTTTGCTGATTCTGCTATATCCTTAGAGTTAAATGGTGAAGTTCTGGAGCCAGCAGATGGCTACATATCTGGCACTACCATGCAGCATGGAAATCCTAGCACAAGCAGCTCGGGCCCTCGTTTGCTCACTGAAGAGGATCTGCAAAGAATACAGGCTGTCTGTCTTGCTGCCACTGCTCTTCAGCTCCTCTTAAAGCTGAAGAGGCACTTGAAGGTTGTGTACAATTTAGATGATGTCCGATGCCAAGCGTTTTCTCCTACTGAACCCCCAAAATCTGGTGAGGTCCTTTCAAAGCAGAATGTGCCTTTTAGTGTGGGTAACATACATTCCAATTTGCCCTCCACTTCTGAAGAGTTAACCCAGAGATATCAGGAATTCAAAAATGCGCTTAGAGAAGATACTGTTGATTATTCAACCTATACAGCGAATATTAAAAGGAAGCGTCCATCCTCCAGAAGAGGAGGTAAGACGGGCCGCATAATGGGGAGGGATGACGAAGATTATGAAGATGATGATGAAGACTGGACAGGTGGACGGAGGAGTAATAGTGGCCGGCAGAGTAGTGGAGTTAGAGCAAGCAGACGGTTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_78244.p1 GENE.S_Transcript_78244~~S_Transcript_78244.p1 ORF type:complete len:1781 (+),score=336.78,Nipped-B_C|PF12830.3|1.5e+03,Nipped-B_C|PF12830.3|1.6e+03,Nipped-B_C|PF12830.3|3.9e+03,Nipped-B_C|PF12830.3|8.9e-50,Cohesin_HEAT|PF12765.3|9.4e+03,Cohesin_HEAT|PF12765.3|7.7e+03,Cohesin_HEAT|PF12765.3|3.2e-13,Cohesin_HEAT|PF12765.3|31,Cohesin_HEAT|PF12765.3|7.6e+03,Cohesin_HEAT|PF12765.3|3.4e+03,PHD|PF00628.25|5.1e-06 S_Transcript_78244:213-5555(+)
MNNNNNHNPNDWTHNKGITLSNTLHSEVAPCFPLPSLPPFCGDSDQELRLFEDQQTRPLNRNDVLAQASKIADLLRHTDVSYLNLKIEATKSCGSSVEPMFLCNEVLRHNPDAFECTLPGPLEERMFSAETGRKIHEIKQHFSNQVQREQAESQNCQRTHVLDDLPSSSTKPRVKKKGSQGVSCAVVTDAGQHQDAVVARFCDVVEDFCSRAEIPGEERDEAEWLLLPTSDIRIVVNEILSIRAEKLLPLVPVDRLEKLLKLLDHQVHRAEGLSIDECEHSDSGASSIFCALEAIHAALAVLAYNDMSKQLYKEEIIERILEFTRRQVMDIMSACDPSYRALHRPGDNGAAEGEDDADADVEYGSASKKRRTSKSVKVKRTMANRVSAAVHTAFQKLCTILGFLKELLLIEFLPDSCVLQLVKTSLSTFLVDNIQLLQMKAMGLISGIFYSYTQHRSHVIEEVVQLLWKLPFSKRAARSCHLPDEEQKQIQMITALLLQLVLHSANLPEMLSQTSNNSAIFENAIETNYLTKCNEVAIETCVAFWTHVLQRLTSVKSQDASEVKVIMENLVLDLLTTLNLPEYPASSLILEVLCVLLLQNAGPKSKDTSVRTMAIDILGTIAARLKHDSVICQLENLWIVQELVGRDNSDHSVLRDTCSVCLDGVVEKVLVICQDCQRLFHPNCMGVREHDISTRGWHCPLCLCKKQLLVLQSYCKSQYKDDCKANRSISEKSCESSESASTMEIVQQMLLNYLEDTVSSDDLHLFARWFYLSLWYKDDPKSRQQFCYRLARVKSKTVIRDSGALSSSLTRDSIKKITLCLGQHSSFSRGFDTILGMLLVSLRENSPVIRAKALRAVSIIVEADPDVLCDKRVQSAVEGRFCDSAISVREAALELVGRHIASHPDVGLQYFEKVAERIKDTGVSVRKRAIKIIRDMCTSNADFPESTNACIEIISRISDEESSIQDLVCKTFYEFWFEEPSGRQYFGDDSSVPLEVARKTEQIVDMLRRMPSNQPLVTVIKRNLALDFLPQTKMMGINPVSMASVRRRCEMMCMFSMERILQVEEMNLEEGEVRILPYVTVLHAFCLVDPSLCAPASNPSQFVVTLQPYLKNQVDNRAVARLLESIIFIIDAVLPLLRKLPQSVVEEVEQDLKQMIVRHSFLTVVHACIKCLCSLSKTAGKGARLIQFLIQVFIKRLDALGVDNKQQVGRSLFCLGLLIRYGNGLLSSFTGGVDIAGSLSLFKKYLLADDFVIKVRALQALGFFLIARPECMLEKDVGKILTSTLSSGCDARLKLQALQNLYDYLLDAESQLGSDKVEDNIIDCSGDGGSAVPVAAGAGDTNICGGIVQLYWDRILERSLDTNDQVRQSSLKIVEVALRQGLVHPITCVPYLIALETDPLEANSKLAHHLLMNMNEKYPAFFESRLGDGLQLSFNFINSMSENSVNMNPKLHYKGAENVNGKTEDATFANARLGVSRIYKFIRANRVARNKFMSSVVRKYDNPSWSETVVPFLMYCTDILSLLPFTTPDEPLYLVYTINRVIQVRSGTLEASLKAFSHHFSQRSSQKVHMENGGSTWQELAANSFADSAISLELNGEVLEPADGYISGTTMQHGNPSTSSSGPRLLTEEDLQRIQAVCLAATALQLLLKLKRHLKVVYNLDDVRCQAFSPTEPPKSGEVLSKQNVPFSVGNIHSNLPSTSEELTQRYQEFKNALREDTVDYSTYTANIKRKRPSSRRGGKTGRIMGRDDEDYEDDDEDWTGGRRSNSGRQSSGVRASRRF*

Click here to download the sequence:
Link to NCBI Protein BLAST