Transcript Information: S_Transcript_78611.p1


Annotated TAIR IDAT1G54520.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 276 Blast hits to 275 proteins in 83 species: Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:20363565-20365874 | Forward length=391
E-Value9E-94
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 140.817007759529
Replicate 248.848698287166
Replicate 354.516944200203
Condition 2: 8 Hour
Replicate 135.39639565835
Replicate 231.687985023425
Replicate 328.566986379696
Condition 3: 24 Hour
Replicate 160.345689877242
Replicate 251.907439416796
Replicate 355.177844944917


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_78611.p1 GENE.S_Transcript_78611~~S_Transcript_78611.p1 ORF type:3prime_partial len:341 (+),score=58.36,DUF1517|PF07466.7|2e-70 S_Transcript_78611:193-1212(+)
ATGGCAGACACATTACTCTTTGAATCTCAATCCACCCCTCTTCTACGCCCTTTCCCAGATCGTTTAACCTCTCTAACACAATTCACCAAACCTTCAATAACTCTCAAACAAAACAAGCCCTTAAAATTCACCCTGAAATGCATAGCATCCAAAACTCAAAATTCTGCAAATCCTAATCTGGGTATAAAAGAAAAGGACCCAAACTCACTTGGGTTTCTCTTAAATTCAGTTTCCAAGGCCTTAAATGCTCTAAAGAAGCCAGCTTTAACCGCCATTTTAGTGGGGTTATTACTCATGTATGACCCGAATACGGCATGGGCCGGGTCGGCTGGGCGGATGGGTGGGCGGAACTTTTCGCGGAGACCGTCAATGTCAAGTTCTCAGGGCTATTCAGTTAGACCAGGTGGTATGGGAAGGGGTTTGTCTTATTCAGTGCCATTTTATGCACCTTCACCATTTAGTGGTGGGTTCTTTATTGGGCCGGCTTATGGGTTTGGAGCAGTGTCCAATTTGGTGTGGATCATGATGGGTTTGGCTGCTTTTGGTGTGGTTTCTGGGTTGATCATGGATAAGCCTCAAGATGGGGTCTTGACTGCTACTGACAAAACTAGTGTCATTAAACTTCAGGTTGGACTATTGGGCATGGCACGGTCACTTCAAAGTGATCTCAATCGGATTGCTGAAAGTGCTGATACATCTACCCCAGAGGGTCTAAGCTATGTCTTGACAGAAACAATACTGGCCTTGCTTCGGCACCCTGATTACTGTATCTCAGCTTATGCATCGGTTGATATTAAAAGGGGCATTGAGGATGGAGAGAAGAAGTTCAACCAACTATCTATTGAGGAACGAGGGAAATTTGATGAAGAAACATTGGTCAATGTGAACAACATAAAGAGACAGAGCACAAGAAGCACGAGAGCCACTGGATTCAGCAACGAGTATATAGTGATTACCATCTTGGTCGCTGCTGAAGGAGTACACAAATTGCCTGCTATGAATGGAAGCCTGGACTTGAAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_78611.p1 GENE.S_Transcript_78611~~S_Transcript_78611.p1 ORF type:3prime_partial len:341 (+),score=58.36,DUF1517|PF07466.7|2e-70 S_Transcript_78611:193-1212(+)
MADTLLFESQSTPLLRPFPDRLTSLTQFTKPSITLKQNKPLKFTLKCIASKTQNSANPNLGIKEKDPNSLGFLLNSVSKALNALKKPALTAILVGLLLMYDPNTAWAGSAGRMGGRNFSRRPSMSSSQGYSVRPGGMGRGLSYSVPFYAPSPFSGGFFIGPAYGFGAVSNLVWIMMGLAAFGVVSGLIMDKPQDGVLTATDKTSVIKLQVGLLGMARSLQSDLNRIAESADTSTPEGLSYVLTETILALLRHPDYCISAYASVDIKRGIEDGEKKFNQLSIEERGKFDEETLVNVNNIKRQSTRSTRATGFSNEYIVITILVAAEGVHKLPAMNGSLDLK

Click here to download the sequence:
Link to NCBI Protein BLAST