Transcript Information: S_Transcript_78909.p1


Annotated TAIR IDAT3G46620.1
Annotated Gene Namezinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:17178837-17180024 | Reverse length=395
E-Value2E-65
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 124.722873306546
Replicate 229.584195088486
Replicate 334.99928324956
Condition 2: 8 Hour
Replicate 116.236376718726
Replicate 218.30423979614
Replicate 319.075261351049
Condition 3: 24 Hour
Replicate 124.823731239312
Replicate 221.440480837851
Replicate 324.147241376489


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_78909.p1 GENE.S_Transcript_78909~~S_Transcript_78909.p1 ORF type:complete len:352 (+),score=67.57,DUF1117|PF06547.8|5.6e-33,zinc_ribbon_9|PF14369.2|6e-13,zinc_ribbon_9|PF14369.2|5.7e+03,zf-RING_2|PF13639.2|4.2e+02,zf-RING_2|PF13639.2|7.3e-10,zf-rbx1|PF12678.3|7.5e-06 S_Transcript_78909:344-1399(+)
ATGGATTCAAGCGGATCCACATACTGGTGCCACAGATGTGACAGGTTCATTAGGGTTCATACTCAACACATTGCTATTTGCCCTGATTGTGGCAGTGGTTTTGTTGAAGGTATTCAAGACTCAACCCTTTCTTCTATTTCCCCTATTTCCCACCCAAATCTTAGCACCGCCAATTCTAGATTCACTAGAAGAAATCCCAATTTTACCCATCACCATTCTTCCCATTTTAACCCTGTAATTGCTCTTCCTAGGTCCCCAAATCATGATACTGATACTCATAGTAATTATCAATTGTATTATGATGATGGGTCTGGACTAGGGCTTCGCCCATTACCAGCAAGTGTATCAAATTTCTTAATGGGGTCTGGTTTTGATAGGGTTCTTCATCAATTAGGGCAATTAGAGATTGCGGGTATTGGGGATAACCCATACCCACCTGCTTCTAAATTTGCTGTTGAAAGTATGCCTGTTGTTAAGATTGTTGCTAGTCATGTTTCCTCTGAATCACATTGTGCTGTTTGTAAAGAACTGTTCGAGCTTGATTGTGAAGCTAGAGAGATGCCTTGCAAGCATATTTATCATTCTGATTGTATTACTCCTTGGCTTTTGTTGCATAATTCTTGCCCCGTGTGTCGGTTCAAGTTACCTACAGACCATCATGTTAATGAGAATAGTTCTGTTGAGGAAATGATGGTTGGTTTGAGGATTTGGAGGCTTCCTGGTGGTGGGTTTGCGGTTGGGAGGTTTATGGGTGGCCGAGAGGCTGCTGAGGGGGATTTTCCTGTTGTGTATACTGAAATGGATGGCGGGTTTGATAACAATGGCGGCGTTAGGAGGGTTTCTTGGCCTTTAAGAGGGAGGAGGTCTCGGGGAAGCAGGGGAATGCTACGTGCCTTTCGTAGTTTCTTGTCTCTTTTCCGGAGAGCTAGGAGTTCTTCCTCTAGTTCAAGTGCTGAAGTTGGGTCGGTGGCTGGAGGAAGTCTTTCTCGTTCACCTTCCATCTTTGGGAGGAGATCAAGGCGGCAGCAAGGTCAAGGGTGGACGTTTGGCGTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_78909.p1 GENE.S_Transcript_78909~~S_Transcript_78909.p1 ORF type:complete len:352 (+),score=67.57,DUF1117|PF06547.8|5.6e-33,zinc_ribbon_9|PF14369.2|6e-13,zinc_ribbon_9|PF14369.2|5.7e+03,zf-RING_2|PF13639.2|4.2e+02,zf-RING_2|PF13639.2|7.3e-10,zf-rbx1|PF12678.3|7.5e-06 S_Transcript_78909:344-1399(+)
MDSSGSTYWCHRCDRFIRVHTQHIAICPDCGSGFVEGIQDSTLSSISPISHPNLSTANSRFTRRNPNFTHHHSSHFNPVIALPRSPNHDTDTHSNYQLYYDDGSGLGLRPLPASVSNFLMGSGFDRVLHQLGQLEIAGIGDNPYPPASKFAVESMPVVKIVASHVSSESHCAVCKELFELDCEAREMPCKHIYHSDCITPWLLLHNSCPVCRFKLPTDHHVNENSSVEEMMVGLRIWRLPGGGFAVGRFMGGREAAEGDFPVVYTEMDGGFDNNGGVRRVSWPLRGRRSRGSRGMLRAFRSFLSLFRRARSSSSSSSAEVGSVAGGSLSRSPSIFGRRSRRQQGQGWTFGV*

Click here to download the sequence:
Link to NCBI Protein BLAST