Transcript Information: S_Transcript_79456.p1


Annotated TAIR IDAT1G53330.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:19896027-19897442 | Forward length=471
E-Value1.3E-162
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9125816802451
Replicate 21.6097314269431
Replicate 32.216294464982
Condition 2: 8 Hour
Replicate 12.4254199287726
Replicate 23.8886689695662
Replicate 32.6530454100621
Condition 3: 24 Hour
Replicate 13.2814202668275
Replicate 22.6749133834745
Replicate 32.1108577935612


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_79456.p1 GENE.S_Transcript_79456~~S_Transcript_79456.p1 ORF type:complete len:466 (+),score=72.67,PPR_2|PF13041.2|0.00069,PPR_2|PF13041.2|2e-16,PPR_2|PF13041.2|2.4e-11,PPR_2|PF13041.2|4.6e-09,PPR_2|PF13041.2|7.5e-06,PPR_2|PF13041.2|7.7e-16,PPR_2|PF13041.2|4.3e-18,PPR_2|PF13041.2|14,PPR_1|PF12854.3|0.09,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|0.0029,PPR_1|PF12854.3|1.2e-09,PPR_1|PF12854.3|1.1e-05,PPR_1|PF12854.3|0.00021,PPR_1|PF12854.3|2e-05,PPR_1|PF12854.3|1.6e-11,PPR_1|PF12854.3|0.00012,PPR|PF01535.16|7.8e+03,PPR|PF01535.16|3.7e+03,PPR|PF01535.16|0.024,PPR|PF01535.16|0.94,PPR|PF01535.16|1.9e-06,PPR|PF01535.16|0.00022,PPR|PF01535.16|0.049,PPR|PF01535.16|7.8e-06,PPR|PF01535.16|7.2e-06,PPR|PF01535.16|1.8e-07,PPR|PF01535.16|0.11,PPR_3|PF13812.2|9.1e+03,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|7.7e-05,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|4.9,PPR_3|PF13812.2|4.9e-06,PPR_3|PF13812.2|0.00019,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|5.8e+02 S_Transcript_79456:214-1611(+)
ATGAAGAAACTAATGGCTGTCACACCGTTTAGGCTCTCACAACTCCTGCGAAGAGAAAAGGACCCAAAGCTTGCTCTCCAGCTCTTCCTAAACCCTAATTGTAATTCTGATTCTAATTTAAACTGCAAACCCTTTCGTTATTCTCTCCTCTCCTATGACCTCATCATTGTCAAACTTGGACGAGCCAAAATGTTTGATGAATTGGGTCAAGTTCTCTCTAAATTGAAGCTAGAAACACGCTTTACTCCAAATGAAATTATTTTCTGCAATGTCATCACATTTTATGCAAGAGCCCGCTTGCCTGACAAAGCACTCCAGGTGTTTGATGAAATACCCTCTTTTCGGTGCCCAAGAACAGTCAAGTCATTGAATACCCTCTTAAATGGTCTTTTAATTTGTCGGGAATTTGATAAAATGAAAAAGATTTTCATTGGTATGGAGCAATTTGCGTATGCTGATGCTTGCACTTACAACATTATGATCAATGCTTGTCGGGTTCAGAATGATTTGGGCGGTGCATGGAAGCTGTTTGATGAAATGTGTGAGAGAGGCCTTCAACCAACTTCTGTGACCTTCTCAACCCTGATTAGTGGGCTTTGTGCAAATTCAAATTTGAAGGGAGCATTTAAGTTGAAAAGGGAAATGACCACTATTTACGGTGTGAAACCTAGTGTGTATATTTATGCTTCTTTAATTAAGGGCCTTTGTGAGCTTCAGGAGCTAACTTTGGCTTTTAGGCTCAAAGATGAGATGCTAGAAAGAAATATTGAAGTAGACTCTGCTATATATACTACCTTAATCACTGGCCTTTTCAAGGCTGGACGCAAGGATGAGGTACATGCGCTTTTGGAGGACATGAAGAGAGCCGGTTGTTACGGTGAGACAGCGACATATAATGCACTAATAACTGGATTTTGTGGGGAAAAACTCTTTGATTTGGCTCTACAGTTCTTAAGCAAGATGGAAGAGCAGGGATGTAAGCCAGATGTTATAAGTTATAATATACTCATTCGGTCATATTGCAGGGAAGAGAAACTACGGGCAGCCATGGATTTGTTTGAAGATCTGCCAAGACGAGGATGTAAACCTGATGTTGTGACATATCGAATACTTTTCGACGGGCTTCTTCATGGGATGAAATTGAAGGAAGCAGCTCTGATATTGGATGAGATGATATTCAAGGGGTACTCTCCTTATTCTGCAGCCATAACTAAATTTATGAAGCTGCTGCATCAAGAAGGGAATTTCGCGTTGTTGTTTGAAGTATTGAGTAGTTTAGCCAAAGGTAATTATATCAATGTTGATTCTTGGAAGCTGGCAATTTCTACAATTTCCAAGGAAGATAAGCTGTTGCACTTCCATAATCTATTTGATATGATACATACTGGGTCTGCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_79456.p1 GENE.S_Transcript_79456~~S_Transcript_79456.p1 ORF type:complete len:466 (+),score=72.67,PPR_2|PF13041.2|0.00069,PPR_2|PF13041.2|2e-16,PPR_2|PF13041.2|2.4e-11,PPR_2|PF13041.2|4.6e-09,PPR_2|PF13041.2|7.5e-06,PPR_2|PF13041.2|7.7e-16,PPR_2|PF13041.2|4.3e-18,PPR_2|PF13041.2|14,PPR_1|PF12854.3|0.09,PPR_1|PF12854.3|1.6e+02,PPR_1|PF12854.3|0.0029,PPR_1|PF12854.3|1.2e-09,PPR_1|PF12854.3|1.1e-05,PPR_1|PF12854.3|0.00021,PPR_1|PF12854.3|2e-05,PPR_1|PF12854.3|1.6e-11,PPR_1|PF12854.3|0.00012,PPR|PF01535.16|7.8e+03,PPR|PF01535.16|3.7e+03,PPR|PF01535.16|0.024,PPR|PF01535.16|0.94,PPR|PF01535.16|1.9e-06,PPR|PF01535.16|0.00022,PPR|PF01535.16|0.049,PPR|PF01535.16|7.8e-06,PPR|PF01535.16|7.2e-06,PPR|PF01535.16|1.8e-07,PPR|PF01535.16|0.11,PPR_3|PF13812.2|9.1e+03,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|1.5,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|7.7e-05,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|4.9,PPR_3|PF13812.2|4.9e-06,PPR_3|PF13812.2|0.00019,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|5.8e+02 S_Transcript_79456:214-1611(+)
MKKLMAVTPFRLSQLLRREKDPKLALQLFLNPNCNSDSNLNCKPFRYSLLSYDLIIVKLGRAKMFDELGQVLSKLKLETRFTPNEIIFCNVITFYARARLPDKALQVFDEIPSFRCPRTVKSLNTLLNGLLICREFDKMKKIFIGMEQFAYADACTYNIMINACRVQNDLGGAWKLFDEMCERGLQPTSVTFSTLISGLCANSNLKGAFKLKREMTTIYGVKPSVYIYASLIKGLCELQELTLAFRLKDEMLERNIEVDSAIYTTLITGLFKAGRKDEVHALLEDMKRAGCYGETATYNALITGFCGEKLFDLALQFLSKMEEQGCKPDVISYNILIRSYCREEKLRAAMDLFEDLPRRGCKPDVVTYRILFDGLLHGMKLKEAALILDEMIFKGYSPYSAAITKFMKLLHQEGNFALLFEVLSSLAKGNYINVDSWKLAISTISKEDKLLHFHNLFDMIHTGSA*

Click here to download the sequence:
Link to NCBI Protein BLAST