Transcript Information: S_Transcript_79508.p1


Annotated TAIR IDAT1G42440.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:15895528-15899939 | Reverse length=793
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 135.226058524948
Replicate 231.183563495956
Replicate 333.901059754178
Condition 2: 8 Hour
Replicate 132.001565494863
Replicate 230.064823140366
Replicate 327.594725597346
Condition 3: 24 Hour
Replicate 129.936603923899
Replicate 227.162191370894
Replicate 329.144056366974


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_79508.p1 GENE.S_Transcript_79508~~S_Transcript_79508.p1 ORF type:complete len:791 (+),score=193.86,RIBIOP_C|PF04950.8|1.3e-113,AARP2CN|PF08142.8|1.4e-20 S_Transcript_79508:116-2488(+)
ATGGGTGGTCGAGCTCAAGTCAATAAGCCTCACAAAACTCGTTTCTCTTCTAAATCCTCTCGCAATCTTCACAAAACCCTCAAAGAAAAGCATCAAGCTGGAAAAGTAGACCGGAATGTTGGCAAAGGAGCTCGTGCCGCTCGTATCCAGCGAAATAAGATGATGCGTGAACAAAAGCGAGCTGCTGTATTGAATGAAAAAAGAGCGTTAAGTGCATCCACTAGTCCACCTCATGTAATTGTCCTATTTGGTTTGTCTGCTCAAGTCGATCTTAATTCTCTTGAAAGAGACTTATTGGCATTGCTGTCATTGGAAAGCAGCAATGATGTGTTTCCTACTGTTGCTTCCTCCGAGTACAAGATGAGAGCTACGGTGCTGAAAGCTCCTCATGGGGATATGTCCTCTTGCATGGAAATGGCCAAGGTTGCTGATTTGATTGCATTCATAGCATCAGCAAATTCTGCATGTGAAGATGGTTCATCTGATTACATTGACTCGTTTGGAGCACAATGCCTTTCTGTATTCAGAGCCATTGGCTTGCCAAGCACAGTCGTCTTTATCCGTGACTTACCTAGTGATCTGAAACGAAGACATGAATCTAAGAAATTCTGCACTTCCAGTCTTGCATCTGAGTTCCCTGAAGATTGCAAATTTTATCCAGCAGACACAAAGGATGAGCTGCACAAGTTCCTATGGCTTTTGAAAGAGCAAAGGCTGACTTCTCCTCACTGGAGGAACCAACGAGCGTATGTTGCCGCTCAAAAGGCTGAGATTCTTGATCACGATTCCGCTGTAGGAAAATGTACGCTCGTTCTCACTGGTTTTCTTCGTGCTCGTAATCTCTCTGTGAACCAGCTGGTTCATGTCTCTGGAGCAGGGGATTATCAATTGTCAAAAATTGAAATTCTGCAGGATCCATATCCTCTGAATCCAAGAAACAGACGGGACATTATGGATGCTGATGATGTACATGATGTGCAGGTCATCCGCTCTTTAATTCCCGACAGTTCAAAGCAAGAGCCTTTACTTGTTGAAAACATTCCAGATCCTCTTGCCGGAGAACAGACATGGCCAACCGAGGCAGAAATGGCTGAGGCAGAGGAAGACCGAAAGAAGAAGAAACTTAAGAAGAGGCGGCTTCCACCTGGTACTTCAGAATATCAGGCTGCTTGGATTGTGGATGACAATGATGAAGGTGATTTTGAAAGTAGTGATGAAGGAAACGATGGTATGGTGTTGGATGAGGGAGAAGACGGTGATTCTTCTAACAAGGCTGTCAACAATTTTGACTTTGAAGATCAAGGCTCTCTTGACATAGGAGATTCTGATGCAGAAACCGAGACAGATTCAGTAATGGTGGATGGAGAGAACATGACTAGGGAGCAGATAGAGGATGACATAAAGCGGCTGAAAGATGCTCATGCAGAAGATGAGGAATTCCCAGACGAAGTTGATACTCCTTTAGATTTGCCTGCAAGAAAGCGTTTTGCAAAGTATCGAGGCCTCAAGTCTTTCAGAACATCTGCATGGGATCCTAAGGAATCACTACCGCCAGAATATGCTAGAATATTTGCTTTCGATAATTTTGCCAGAACTCAAAAACATGTGCGTGCTAAAGCTTCAGAATTGGACAAAGAGAGCAAGGATGACATTGTTTCCCCTGGCGCATATACAAGGCTGTATATTAAAGATGTACCAATTACTGCTGCTTCAAAAACATGTATGCATGCAAAAATAATGCCCATTATAGCAAGCAGCCTATTGCAACATGAGTCCAAGATATCTGTCCTCCATTTCAGCATTAAAAAGCATGATAGTTACACTGAACCAATCAAAGCAAAAGAGGAGCTAATTTTTCATGTTGGTTTCCGGCAGTTTGTTGCTAGGCCAGTATTTTCTACGGACAGCCTCAATTCTGACAAGCACAAGATGGAGAGGTTTCTTCATGCTGGGCGCTTTTCTATGGCTTCAATATATGCTCCAATTTCCTTTCCACCTCTTCCTTTGGTTGCGATGAAGAATGTAGGAGAGGCGAACTCACCTGTTGTGGCTGCTGTTGGTTCTCTGAAAAGTGTTGACCCAGACAGGATCATTCTGAAGAAGATCATTCTAACTGGTTACCCACAGCGAGTTTCTAAAGTCAAAGCCACAGTGAGATATATGTTCCACCACCCTGAAGACGTAAAATGGTTCAAGCCTGTTGAAGTATGGACTAAATGCGGACGTCGTGGGCGTGTCAAGGAGCCTGTTGGTACTCATGGGGCAATGAAGTGCGTCTTCAATGGGGTTCTCCAACAGCATGACACTGTTTGCATGAGCCTGTACAAGCGTGCATACCCCAAGTGGCCAGAACATCAGTTTCCGGTTGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_79508.p1 GENE.S_Transcript_79508~~S_Transcript_79508.p1 ORF type:complete len:791 (+),score=193.86,RIBIOP_C|PF04950.8|1.3e-113,AARP2CN|PF08142.8|1.4e-20 S_Transcript_79508:116-2488(+)
MGGRAQVNKPHKTRFSSKSSRNLHKTLKEKHQAGKVDRNVGKGARAARIQRNKMMREQKRAAVLNEKRALSASTSPPHVIVLFGLSAQVDLNSLERDLLALLSLESSNDVFPTVASSEYKMRATVLKAPHGDMSSCMEMAKVADLIAFIASANSACEDGSSDYIDSFGAQCLSVFRAIGLPSTVVFIRDLPSDLKRRHESKKFCTSSLASEFPEDCKFYPADTKDELHKFLWLLKEQRLTSPHWRNQRAYVAAQKAEILDHDSAVGKCTLVLTGFLRARNLSVNQLVHVSGAGDYQLSKIEILQDPYPLNPRNRRDIMDADDVHDVQVIRSLIPDSSKQEPLLVENIPDPLAGEQTWPTEAEMAEAEEDRKKKKLKKRRLPPGTSEYQAAWIVDDNDEGDFESSDEGNDGMVLDEGEDGDSSNKAVNNFDFEDQGSLDIGDSDAETETDSVMVDGENMTREQIEDDIKRLKDAHAEDEEFPDEVDTPLDLPARKRFAKYRGLKSFRTSAWDPKESLPPEYARIFAFDNFARTQKHVRAKASELDKESKDDIVSPGAYTRLYIKDVPITAASKTCMHAKIMPIIASSLLQHESKISVLHFSIKKHDSYTEPIKAKEELIFHVGFRQFVARPVFSTDSLNSDKHKMERFLHAGRFSMASIYAPISFPPLPLVAMKNVGEANSPVVAAVGSLKSVDPDRIILKKIILTGYPQRVSKVKATVRYMFHHPEDVKWFKPVEVWTKCGRRGRVKEPVGTHGAMKCVFNGVLQQHDTVCMSLYKRAYPKWPEHQFPVV*

Click here to download the sequence:
Link to NCBI Protein BLAST