Transcript Information: S_Transcript_80262.p1


Annotated TAIR IDAT5G54080.1
Annotated Gene Namehomogentisate 1,2-dioxygenase
Annotated Gene Symbol(s)HGO
Annotation TypeOrtholog
Chromosome Positionchr5:21945920-21948070 | Forward length=461
E-Value8.2E-69
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.8387201317526
Replicate 21.7650231646012
Replicate 34.3033050861735
Condition 2: 8 Hour
Replicate 11.5638619565898
Replicate 21.3423109183836
Replicate 31.2789508562989
Condition 3: 24 Hour
Replicate 12.9126511320792
Replicate 21.0576445402295
Replicate 32.1859105151101


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_80262.p1 GENE.S_Transcript_80262~~S_Transcript_80262.p1 ORF type:5prime_partial len:150 (+),score=20.04,HgmA|PF04209.9|1e-50 S_Transcript_80262:2-451(+)
ACGTACCGTCCTTCTGTTCACACATTGTGGTTTACAGGGCTATGGATCACTACTGAGTGTGGAAGATTGCAAGTTTCTCCTGGTGAAGTTGCTGTTGTGCCTCAAGGATTTCGTTTTGCTATCAGCTTGCCTGATGGTCCATCACGTGGTTATGTTGCTGAGATATTTGGGGCGCATTTTCATCTTCCAGATCTGGGCCCAATAGGTGCGAATGGTTTAGCTTCTGCAAGACATTTCCTCGTGCCTACTGCTTGGTTTGACAAGAGTACCTGTCCAAATTACACAATTGTACAAAAATATGGCGGGGAGTTATTCACCGCAAAACAAGATTTCTCTCCCTTCAATGTGGTTGCTTGGCATGGTAACTATGTCCCATGTAAGGTAAGTAAAGCTCTGCTGTACTGTCTGTCCTTTAAAGGAGTTCTTAGCTTGACTATCATGAATGCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_80262.p1 GENE.S_Transcript_80262~~S_Transcript_80262.p1 ORF type:5prime_partial len:150 (+),score=20.04,HgmA|PF04209.9|1e-50 S_Transcript_80262:2-451(+)
TYRPSVHTLWFTGLWITTECGRLQVSPGEVAVVPQGFRFAISLPDGPSRGYVAEIFGAHFHLPDLGPIGANGLASARHFLVPTAWFDKSTCPNYTIVQKYGGELFTAKQDFSPFNVVAWHGNYVPCKVSKALLYCLSFKGVLSLTIMNA*

Click here to download the sequence:
Link to NCBI Protein BLAST