Transcript Information: S_Transcript_80266.p1


Annotated TAIR IDAT5G54080.1
Annotated Gene Namehomogentisate 1,2-dioxygenase
Annotated Gene Symbol(s)HGO
Annotation TypeOrtholog
Chromosome Positionchr5:21945920-21948070 | Forward length=461
E-Value1.1E-166
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.9466545046804
Replicate 23.444747811954
Replicate 37.1988375047512
Condition 2: 8 Hour
Replicate 18.086207480846
Replicate 27.5681718446659
Replicate 35.4676337722815
Condition 3: 24 Hour
Replicate 15.7657499175918
Replicate 26.2346544856866
Replicate 36.7508817738601


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_80266.p1 GENE.S_Transcript_80266~~S_Transcript_80266.p1 ORF type:3prime_partial len:269 (+),score=42.23,HgmA|PF04209.9|2.3e-134 S_Transcript_80266:832-1635(+)
ATGGTTTGCAAACTATTTGTGGAGCAGGCAGTTCGTATCTCCGGCATGGATATGCAGTTCACATGTAATTGGTACACTGCCAACAAATCAATGGATAACTGTGCCTTCTGCAATGCTGATGGTGATTTCTTGTTCGTCCCTCAAAAAGGAAGGCTATGGATCACTACTGAGTGTGGAAGATTGCAAGTTTCTCCTGGTGAAGTTGCTGTTGTGCCTCAAGGATTTCGTTTTGCTATCAGCTTGCCTGATGGTCCATCACGTGGTTATGTTGCTGAGATATTTGGGGCGCATTTTCATCTTCCAGATCTGGGCCCAATAGGTGCGAATGGTTTAGCTTCTGCAAGACATTTCCTCGTGCCTACTGCTTGGTTTGACAAGAGTACCTGTCCAAATTACACAATTGTACAAAAATATGGCGGGGAGTTATTCACCGCAAAACAAGATTTCTCTCCCTTCAATGTGGTTGCTTGGCATGGTAACTATGTCCCATGTAAGTATGATTTGAGCAAGTTTTGTCCTTTCAATACTGTATTGGTGGATCACGGGGATCCATCGATAAATACAGTGCTAACTGCCCCGACAGAGAAGCCTGGTGTGGCATTACTTGATTTTGTTATTTTCCCCCCAAGGTGGCTGGTTGCTGAGCACACCTTCAGACCTCCTTATTACCACCGCAATTGTATGAGTGAATTTATGGGTCTGATTTACGGTGATTATGAGGCAAAGGCTGACGGGTTTCTCCCTGGGGGTGCGAGTCTACATAGTTGCATGACACCACATGGTCCAGATACTAAGACTTATGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_80266.p1 GENE.S_Transcript_80266~~S_Transcript_80266.p1 ORF type:3prime_partial len:269 (+),score=42.23,HgmA|PF04209.9|2.3e-134 S_Transcript_80266:832-1635(+)
MVCKLFVEQAVRISGMDMQFTCNWYTANKSMDNCAFCNADGDFLFVPQKGRLWITTECGRLQVSPGEVAVVPQGFRFAISLPDGPSRGYVAEIFGAHFHLPDLGPIGANGLASARHFLVPTAWFDKSTCPNYTIVQKYGGELFTAKQDFSPFNVVAWHGNYVPCKYDLSKFCPFNTVLVDHGDPSINTVLTAPTEKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGDYEAKADGFLPGGASLHSCMTPHGPDTKTYE

Click here to download the sequence:
Link to NCBI Protein BLAST