Transcript Information: S_Transcript_80267.p1


Annotated TAIR IDAT5G54080.1
Annotated Gene Namehomogentisate 1,2-dioxygenase
Annotated Gene Symbol(s)HGO
Annotation TypeOrtholog
Chromosome Positionchr5:21945920-21948070 | Forward length=461
E-Value7.5E-72
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.2638586420504
Replicate 22.2895347654025
Replicate 31.9138688388642
Condition 2: 8 Hour
Replicate 11.4082804926409
Replicate 22.3216069343113
Replicate 32.4131148232054
Condition 3: 24 Hour
Replicate 14.946011356361
Replicate 22.351904974904
Replicate 31.9035505211408


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_80267.p1 GENE.S_Transcript_80267~~S_Transcript_80267.p1 ORF type:5prime_partial len:106 (+),score=8.69,HgmA|PF04209.9|1.2e-58 S_Transcript_80267:2-319(+)
TGTCCTTTCAATACTGTGTTGGTTGATCACGGAGATCCATCGATAAATACAGTGCTAACTGCCCCGACAGAGAAGCCTGGTGTGGCATTACTTGATTTTGTTATTTTCCCCCCAAGGTGGCTGGTTGCTGAGCACACCTTCAGACCTCCTTATTACCACCGCAATTGTATGAGTGAATTTATGGGTCTGATTTACGGTGATTATGAGGCAAAGGCTGACGGGTTTCTCCCTGGGGGTGCGAGTCTACATAGTTGCATGACACCACATGGTCCAGATACTAAGACTTATGAGGTATGTTGCCAGAAAACTCAAAATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_80267.p1 GENE.S_Transcript_80267~~S_Transcript_80267.p1 ORF type:5prime_partial len:106 (+),score=8.69,HgmA|PF04209.9|1.2e-58 S_Transcript_80267:2-319(+)
CPFNTVLVDHGDPSINTVLTAPTEKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGDYEAKADGFLPGGASLHSCMTPHGPDTKTYEVCCQKTQN*

Click here to download the sequence:
Link to NCBI Protein BLAST