Transcript Information: S_Transcript_80547.p1


Annotated TAIR IDAT5G57060.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23090666-23091796 | Forward length=137
E-Value1.1E-47
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.910215256213
Replicate 219.304940862826
Replicate 317.290065078375
Condition 2: 8 Hour
Replicate 135.034569806719
Replicate 228.963554042503
Replicate 332.735051679079
Condition 3: 24 Hour
Replicate 122.039927093189
Replicate 215.986081379745
Replicate 316.889761878426


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_80547.p1 GENE.S_Transcript_80547~~S_Transcript_80547.p1 ORF type:complete len:112 (+),score=13.12 S_Transcript_80547:814-1149(+)
ATGTGTTTAAATTTTATAGGACCAGGAAAGGATGGAGCTCCAAATGGGAAGGCCAAGTACACTCTTATCAGAGATGTAGAGGACTGCCAACCGGGAATCTTTGACAAGCCTCTTCCTTGCTTTGGCTGTGGTTTAGGGTGGTTTTCCTTTCTTGTAGGTTTTATGTTCCCTCCATTGTGGTTCTATGCAACATTCCTATATTTCGGAAACGCTTACCGTAAAGATCCAAGAGAAAGAGGTGGTCTTGCTGCTTCTGCAATAGCTGCTTTGGGCTGTTCTATTGTGGTATCAATTATACTTCTCGTCAGGCTATTTTCGTCTGGTCATACAGCGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_80547.p1 GENE.S_Transcript_80547~~S_Transcript_80547.p1 ORF type:complete len:112 (+),score=13.12 S_Transcript_80547:814-1149(+)
MCLNFIGPGKDGAPNGKAKYTLIRDVEDCQPGIFDKPLPCFGCGLGWFSFLVGFMFPPLWFYATFLYFGNAYRKDPRERGGLAASAIAALGCSIVVSIILLVRLFSSGHTA*

Click here to download the sequence:
Link to NCBI Protein BLAST