Transcript Information: S_Transcript_81280.p1


Annotated TAIR IDAT4G32520.1
Annotated Gene Nameserine hydroxymethyltransferase 3
Annotated Gene Symbol(s)SHM3, AtSHMT3
Annotation TypeOrtholog
Chromosome Positionchr4:15689642-15692334 | Reverse length=529
E-Value4.9E-168
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.54312247418736
Replicate 20.51458401300326
Replicate 30.59145800851197
Condition 2: 8 Hour
Replicate 12.8599648821811
Replicate 21.5001531157834
Replicate 31.677923863949
Condition 3: 24 Hour
Replicate 10.25475082787865
Replicate 20.85897828131929
Replicate 30.29413462863109


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_81280.p1 GENE.S_Transcript_81280~~S_Transcript_81280.p1 ORF type:5prime_partial len:343 (+),score=52.92,SHMT|PF00464.15|8.3e-119 S_Transcript_81280:1-1029(+)
GAGAAGTGGGGTGTAAATGTTCAACCATTGTCTGGCTCGCCTGCAAATTTTGAGGTTTACACTGCACTCCTGAACCCACATGACCGAATCATGGGTCTAGATTTACCTCATGGAGGACATTTGTCTCATGGGTTTATGACTCCTAAAAGACGAGTTTCAGGAACATCGATTTACTTTGAATCTATGCCTTACCGCCTTGATGAGTCCACAGGTTTGGTCAATTATGACATGCTTGAGAAAACTGCCACTCTATTTCGGCCAAAACTCATCATTGCTGGAGCTAGTGCATATCCTAGGGATTTTGACTATCCTCGCATGAGGAAGATTGCAGATGCAGTTGGCGCATTTCTTATGATGGACATGGCACATATAAGTGGGCTCGTTGCTGCTTCTGTAGTTGGCAACCCATTTGAGTACTGTGATATAGTGACCACGACAACTCACAAGTCTCTACGAGGTCCTAGAGGTGGAATGATCTTCTACAAGAAGGATACCATATTAGGAGTTGATTTAGAATCTGCCATTAATAACGCTGTCTTCCCTGGTTTACAGGGTGGTCCACACAACCACACAATAGGTGGACTCGCAGTTTGCCTGAAGTATGCACAATCTCCGGAGTTTAAGGCATACCAAAACAATGTGGTCTCAAACTGTAGAGCTCTTGCAAGCAGATTGCTGGTATTGGGATACAAGCTAGTTTCTGGTGGGAGTGATAACCACCTCGTTCTTGTGGATCTAAGACCAATGGAATTTACGTTCCGATGGAAGCTGAATTCTGCTGGAGGAAGGCCTGCACTTTTAAGCATGCTTCTCTCCTCGAAACTGCCACAAATGTGGTTGTGTGCTCTAATATTTCTGACAAGGGAGTGTCACACTGTCGCTTTGAAGAACATTGTGATAAAAGGTGCAAAGGCATCTTTGCAACAACTAAAACAGCTAAGCCTTAGTCCTAGACGAAATTTGGGTTTGTTGTCAGTTTCATCATCGCTTTATACCTTTCCACCAGGTTCGTTGTTTCTGATGCAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_81280.p1 GENE.S_Transcript_81280~~S_Transcript_81280.p1 ORF type:5prime_partial len:343 (+),score=52.92,SHMT|PF00464.15|8.3e-119 S_Transcript_81280:1-1029(+)
EKWGVNVQPLSGSPANFEVYTALLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVNYDMLEKTATLFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVGNPFEYCDIVTTTTHKSLRGPRGGMIFYKKDTILGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKYAQSPEFKAYQNNVVSNCRALASRLLVLGYKLVSGGSDNHLVLVDLRPMEFTFRWKLNSAGGRPALLSMLLSSKLPQMWLCALIFLTRECHTVALKNIVIKGAKASLQQLKQLSLSPRRNLGLLSVSSSLYTFPPGSLFLMQ*

Click here to download the sequence:
Link to NCBI Protein BLAST