Transcript Information: S_Transcript_8158.p1


Annotated TAIR IDAT5G12440.1
Annotated Gene NameCCCH-type zinc fingerfamily protein with RNA-binding domain
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:4035891-4038604 | Reverse length=650
E-Value3E-70
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.4516403458505
Replicate 24.412557911503
Replicate 310.248891909315
Condition 2: 8 Hour
Replicate 113.404531056484
Replicate 215.053058156159
Replicate 313.215825515088
Condition 3: 24 Hour
Replicate 17.8017441037836
Replicate 29.7778158515099
Replicate 39.800565825988


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_8158.p1 GENE.S_Transcript_8158~~S_Transcript_8158.p1 ORF type:complete len:700 (+),score=176.54,RRM_1|PF00076.18|2.2e-07,RRM_1|PF00076.18|6.3e+02 S_Transcript_8158:762-2861(+)
ATGGAATCCTATGAAGCAACTAGAGCAGTATTTTCGAGGGTTCAAAGTATAGATCCAGAAAATGCTTCAAAGATTATGGGTTATATACTTCTACACCATGGGGAGAAAGACATGATACGGTTTGCTTATGGACCACAAACACTGATAGTTTCAATAGTAAACAGAGCCAAAACTGACTTAGGACTTTTGTCGAACACCTCATCTGCACCAGTAGTTAGCCCTATCTCAAACCCTATTTCCATTTCTAGGCCTAACCCACTTTCTCTTTCACTTCCTTCTCCAAGATTACCCTCCAATGGGTTTAACCCTTCTTCTCCCTCTTCACCCTCAGTTTGGTCTCCACACCATTCTTTAAGCCCTAATGCAAATGCAAGTCACTCTCTTTCTTATGCTGCTGTTGTTAATGGGACTTGCAGTAACACAAATGGGTCTTTCTCATCTTCTTCAGTTGGGTCACCCCAAGTTGGGTTTACTGGGGTTAGTAGCAGCAGTCGAGAGAATTTCATAGAGGACTATCATTTGCAAGACCAAAACCTCTCCTTTCTTAGTGACCCATTAGCTATACCTTCTAAAAATGTGGACTTCTTTGAGCAAGGTATGGATTTGGCTATGAGTCCTGGTTGTAGGAGTGATTCTATGTTGTACCCATTTTGTTGGGATAACTCAGATGGTGGTGCTGAGAGTAATGCTCATTTTCATAGGAGAAGTTCTTCTTTTAATGATATGTACTATGGAACTGATGATTCAACTTCTGGGTTTGGTTTCAAGCCTTGTCTTTACTATGCTAAGGGCTTCTGCAAGAATGGGAGTACTTGTAAGTTTGTTCATGGTGCTGGGTTTCCTGATTCACCTGATAATTCTTCCCCCAAGTTTGATCCCTTTGAGCAGTGCCAAGAAGAGATGTTAAGGTCAAAGTTTGCTCAGCAACAAAGATTGGCTGCCCAATTGATGGCTAGTGGGGTTAATTTCCCTTACAAGAAGTTAAACTTTCTTCAAAGTGAGGCTCAAAGATCTGCAGCTGCAGCATTGATGATGGGTGAGGAGTTTCACAAGTTGAACCGAGTGAGGATGTCAAGAAATGAATTTTCTGGAATGGGTTTGAGAGGAGATTCAAATCCTGGTTCTAGACAAATTTACTTGACTTTCCCAGCTGATAGCACCTTCAAAGAAGAGGATGTTTCTCAGTATTTTAGCAACTTTGGACCAGTTCAAGATGTGAGGATTCCATATCAACAGAAGAGAATGTTTGGTTTTGTTACATTTGTGTATCCTGAGACTGTCAATATGATTTTGGCCAAAGGAAACCCCCACTTTGTTTGTGATTCTCGTGTCCTTGTCAAACCTTACAAGGAGAAAGGAAAAATTCCTTACAAGAAGCAACAACAGCAGCAGCAACTAGAAAGGGGAGATTTCTCATGCTCTAGTCCTTCTGGACTTGATTCTAGAGAGCCTTTTGACTTCCAGCTTGGGGGGAGAATGTTCTACAGTACACAAGAGATGTTGTTGAAGAAAAAGCTCGAGGAACAAGCTGATTTGCAACAGGCCCTTGAACTACAAGGTAGGAGGCTGATGAATTTGCAGCTCATGGATTTGAAGAATCATCTATATCACCAGCAGGCTGTCGGGTCTCCGGTACTATCTCCTAATCTGTCTCAATTGTCGTCAAATCTTAGTGCTCCTAACCTGTCTAATGGGACGAGCGAGGATATTTCAGAAGGAAGCGAAGAAAGTTCAACTGGAGCACCTGATCTGCAGTTAGGTGAGGGGGATAAGGCAGCTCCAGTTGTTGAGGGAAATGGCAATGTCCAAAACAAAGAGAGTCATTCCGTCGATGATGAATGTGAACTTCCTGAGAGCTTAGAACATATCCTTCCAGACAACCTCTTTGCCTCTCCTACTAAGAAGGGCTCTGAACGCCGATCATCATCGGTTTTCTCTTCTGCATTCGCGGAGCACAAAGATGGCGCTGCAATCACCAGCCCCTCGGTTGTTAATGGTGACTCGTCAATGCCTGCCTCATCACCTCTCCTGGCTACTCATAAATCTTGTTTCTTTGAGATGCCTAGGCTTTCCTCTGGGCAAAGAGCCCTAGGAATGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_8158.p1 GENE.S_Transcript_8158~~S_Transcript_8158.p1 ORF type:complete len:700 (+),score=176.54,RRM_1|PF00076.18|2.2e-07,RRM_1|PF00076.18|6.3e+02 S_Transcript_8158:762-2861(+)
MESYEATRAVFSRVQSIDPENASKIMGYILLHHGEKDMIRFAYGPQTLIVSIVNRAKTDLGLLSNTSSAPVVSPISNPISISRPNPLSLSLPSPRLPSNGFNPSSPSSPSVWSPHHSLSPNANASHSLSYAAVVNGTCSNTNGSFSSSSVGSPQVGFTGVSSSSRENFIEDYHLQDQNLSFLSDPLAIPSKNVDFFEQGMDLAMSPGCRSDSMLYPFCWDNSDGGAESNAHFHRRSSSFNDMYYGTDDSTSGFGFKPCLYYAKGFCKNGSTCKFVHGAGFPDSPDNSSPKFDPFEQCQEEMLRSKFAQQQRLAAQLMASGVNFPYKKLNFLQSEAQRSAAAALMMGEEFHKLNRVRMSRNEFSGMGLRGDSNPGSRQIYLTFPADSTFKEEDVSQYFSNFGPVQDVRIPYQQKRMFGFVTFVYPETVNMILAKGNPHFVCDSRVLVKPYKEKGKIPYKKQQQQQQLERGDFSCSSPSGLDSREPFDFQLGGRMFYSTQEMLLKKKLEEQADLQQALELQGRRLMNLQLMDLKNHLYHQQAVGSPVLSPNLSQLSSNLSAPNLSNGTSEDISEGSEESSTGAPDLQLGEGDKAAPVVEGNGNVQNKESHSVDDECELPESLEHILPDNLFASPTKKGSERRSSSVFSSAFAEHKDGAAITSPSVVNGDSSMPASSPLLATHKSCFFEMPRLSSGQRALGM*

Click here to download the sequence:
Link to NCBI Protein BLAST