Transcript Information: S_Transcript_82215.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.073213208349878
Replicate 20
Replicate 30.050736550436315
Condition 2: 8 Hour
Replicate 10.029333411715451
Replicate 20.12309132676603
Replicate 30.087960856691808
Condition 3: 24 Hour
Replicate 10
Replicate 20.062348862658452
Replicate 30.069386642104859


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_82215.p1 GENE.S_Transcript_82215~~S_Transcript_82215.p1 ORF type:complete len:727 (-),score=141.24,UBN2_3|PF14244.2|4.7e-39,UBN2_3|PF14244.2|2.3e+03,rve|PF00665.22|8.2e+03,rve|PF00665.22|8.4e-21,gag_pre-integrs|PF13976.2|2.5e+03,gag_pre-integrs|PF13976.2|5.8e-08,Retrotrans_gag|PF03732.13|1.3e-05,Retrotrans_gag|PF03732.13|1.1e+04,Retrotrans_gag|PF03732.13|8.8e+03 S_Transcript_82215:2255-4435(-)
ATGGCAGCTTCTACAGTTTCTACAGTTTTGGATTCCAGCCACCCCATGTATCTACATCCTAGTGATAGTCTTGGTATGGTTTTGGTTTCAAAGGTCTTTGATGGTTCTGGTTTTATTTCTTGGAAGAAATCTATCTCTATTGCTCTTAGTGCTAAAAATAAATCTGGTTTTGTTGATGGTACATGTACTTGTCCTGATCTTGATGATCCTTTATACAAAGTTTGGATTAGATGTGACAATATGGTCACTTCCTGGTTATTGAATGCTCTCTCTAAAACTATTGCTGAAAGTGTTTTGTACAATAATTCTGCCTATGCTATTTGGAGGGATTTATGTGAGAGGTATGGACAAACAAATGGTGCTCAGTTGTTTCAGACACAAAAGGATGTTTGTAATATGAGTCAAGGTGACAATAATATTGCAACTTATTTCATGAATGCCAAAAGACTTTGGGATGAACATAATGCTGTTCATGTATTGCCTGCTTGTACATGTGGTCTTGCTGCTGAATGGCAAAGGTACTTAGATAGGATGAAGTTGATGCAATTTTTGATGGGTCTCAATGATGATTTTGTTCCTGCAAGAGGCAACATTCTTTTTCAAATACCCTTGCCAAATTTGAATCAAGCTTATTCTATGTTACTTCAAGAGGAAGCTCAAAAGGAAATACATGCTACTACAAAGTTCAATACAGATTCTGCTTCTTTTCATGTGTCTTCTAATAGACATTCTCAGAGACCTCAGCAACTTTCTAATGATTCAAGATTTTCATCTACATCTGATAACAGGAGATTGGATTCAAAGTCTCAATTGATCTGCAATTATTGCAAGAAATCTGGTCACACTATCAAGCAATGTTATAAACTCAATGGTTTTCCATCTACATTCAAATCCAACAATCCCAGATTCAGGAAAATGGCTGCTCACGTTGACACTCAATACAATGACATGGATACTACTCTAGATGATCAGTCAGGCACTTCAGATACACCTAAACTCACAAAGGAACAAACTCTCCAACTTTTAGCTCTTCTGAACACTTCTGGAAGTTCTGATCATCATGCTGGAGGTTCTGCTAATACAGCATCAATTACTGCTTCTCCTCATTTTTCAGGTGATGATATTTCAAATCCTTTTTATAATCATAATGCTTCTTGTTATTGCAATGTGTGTAATGTGGTTGCTAAAGCATGGATCATTGACACTGGGGCCAGTGATCATATGTGTTGTGATCAATCCCTTTTCAAACACATTTCCATTCTTCCTCATCCTTATGATATTTCATTGCCAAATGGTTCTGCCATTTCAGTTACACATGCTGGAACAATAAATCTTTTACCTGATCTTATATTACATGAAGTATTGTATGTTCCTCATTTCAAGTGTAACCTTTTGTCCATTCCCAAATTAACCAAACAAACATCCTGTTCTATCTCTTTCTCATCTTCCCTCTGCATGCTACAGGCCCCTTCAATGAAGCGGCCTTTGGTTCTTGGTAGGCAGCAGGGGGGACTCTATCTTCTACATCCTAATGAAGCATCATCCAGCTCCTCAGCTTCTCCTCCTTCCAATTGCAATTCTGCTACTCCAAATAGTTGTAACAATGTTTCTGCTGAGTGTTTGTTATGGCACTCTAGGCTTGGCCATCTACCATTGTACAAATTGAAACAATTGTCTCTTACTTCTATTGATAATAATACCTTGTCTCATTTTTACTGTGATACATGTCATCGAGCTAGACAACATAAATTGCCTTTTCCTCACAGTACAATAAAAACTTCTAAACCTTTTGAGCTAATTCATGTGGATCTGTGGGGGCCTTACCATCAACCTACACATGATGGACACAAGTATTTCCTTACCATAGTTGATGATTATAGCAGATGCACTTGGACACATTTGCTAAGTTCTAAGAGTAACACTTTGACCCTTCTGAAATCCTTTGTTTCAATGGTAAAAACTCAATTTCAAACTGATCTTCAAATTATCAGAAGTGACAATGCTCTTGAGATTGGTAAAAGCCAGGAAGCAATAAAATTTTTCAGAGAAAAAGGCATATTACATCAAACAAGTTGTGTGGATAGACCACAGCAAAATGGCATTGTTGAAAGAAAACATAAACATTTGCTTGAGACATCAAGAGCACTTCTGTTTCAATCTAATGTTCCTCTCAAGTTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_82215.p1 GENE.S_Transcript_82215~~S_Transcript_82215.p1 ORF type:complete len:727 (-),score=141.24,UBN2_3|PF14244.2|4.7e-39,UBN2_3|PF14244.2|2.3e+03,rve|PF00665.22|8.2e+03,rve|PF00665.22|8.4e-21,gag_pre-integrs|PF13976.2|2.5e+03,gag_pre-integrs|PF13976.2|5.8e-08,Retrotrans_gag|PF03732.13|1.3e-05,Retrotrans_gag|PF03732.13|1.1e+04,Retrotrans_gag|PF03732.13|8.8e+03 S_Transcript_82215:2255-4435(-)
MAASTVSTVLDSSHPMYLHPSDSLGMVLVSKVFDGSGFISWKKSISIALSAKNKSGFVDGTCTCPDLDDPLYKVWIRCDNMVTSWLLNALSKTIAESVLYNNSAYAIWRDLCERYGQTNGAQLFQTQKDVCNMSQGDNNIATYFMNAKRLWDEHNAVHVLPACTCGLAAEWQRYLDRMKLMQFLMGLNDDFVPARGNILFQIPLPNLNQAYSMLLQEEAQKEIHATTKFNTDSASFHVSSNRHSQRPQQLSNDSRFSSTSDNRRLDSKSQLICNYCKKSGHTIKQCYKLNGFPSTFKSNNPRFRKMAAHVDTQYNDMDTTLDDQSGTSDTPKLTKEQTLQLLALLNTSGSSDHHAGGSANTASITASPHFSGDDISNPFYNHNASCYCNVCNVVAKAWIIDTGASDHMCCDQSLFKHISILPHPYDISLPNGSAISVTHAGTINLLPDLILHEVLYVPHFKCNLLSIPKLTKQTSCSISFSSSLCMLQAPSMKRPLVLGRQQGGLYLLHPNEASSSSSASPPSNCNSATPNSCNNVSAECLLWHSRLGHLPLYKLKQLSLTSIDNNTLSHFYCDTCHRARQHKLPFPHSTIKTSKPFELIHVDLWGPYHQPTHDGHKYFLTIVDDYSRCTWTHLLSSKSNTLTLLKSFVSMVKTQFQTDLQIIRSDNALEIGKSQEAIKFFREKGILHQTSCVDRPQQNGIVERKHKHLLETSRALLFQSNVPLKF*

Click here to download the sequence:
Link to NCBI Protein BLAST